Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 MIR4497-201ENST00000583208 89 ntBASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 AL032819.2-201ENST00000624543 2162 ntBASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 AIRN-201ENST00000601203 4374 ntBASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 KRT8P8-201ENST00000434750 1448 ntBASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
PTCHD3Q3KNS1 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.62
PTCHD3Q3KNS1 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.89■□□□□ 0.62
PTCHD3Q3KNS1 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
PTCHD3Q3KNS1 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 RPS2P55-201ENST00000397318 883 ntBASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 AC107956.1-201ENST00000494359 873 ntBASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTCHD3Q3KNS1 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 AC012618.2-201ENST00000428058 849 ntBASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 TUBB8P6-201ENST00000436895 1288 ntBASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 AC233702.5-201ENST00000584107 538 ntBASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD3Q3KNS1 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms