Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 AC034232.1-201ENST00000506026 1064 ntBASIC14.05□□□□□ -0.16
PRKDCP78527 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC14.05□□□□□ -0.16
PRKDCP78527 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC14.05□□□□□ -0.16
PRKDCP78527 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
PRKDCP78527 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC14.05□□□□□ -0.16
PRKDCP78527 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14.05□□□□□ -0.16
PRKDCP78527 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PRKDCP78527 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
PRKDCP78527 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
PRKDCP78527 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PRKDCP78527 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
PRKDCP78527 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
PRKDCP78527 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC14.05□□□□□ -0.16
PRKDCP78527 GLRB-205ENST00000512619 728 ntTSL 3 BASIC14.05□□□□□ -0.16
PRKDCP78527 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.05□□□□□ -0.16
PRKDCP78527 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC14.05□□□□□ -0.16
PRKDCP78527 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC14.04□□□□□ -0.16
PRKDCP78527 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC14.04□□□□□ -0.16
PRKDCP78527 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PRKDCP78527 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PRKDCP78527 HNRNPA1P28-201ENST00000424481 961 ntBASIC14.04□□□□□ -0.16
PRKDCP78527 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.04□□□□□ -0.16
PRKDCP78527 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC14.04□□□□□ -0.16
PRKDCP78527 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
PRKDCP78527 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PRKDCP78527 AL390719.2-201ENST00000606993 987 ntBASIC14.04□□□□□ -0.16
PRKDCP78527 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.04□□□□□ -0.16
PRKDCP78527 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PRKDCP78527 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PRKDCP78527 AC134684.3-201ENST00000641758 218 ntBASIC14.04□□□□□ -0.16
PRKDCP78527 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
PRKDCP78527 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
PRKDCP78527 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PRKDCP78527 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC14.03□□□□□ -0.16
PRKDCP78527 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PRKDCP78527 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PRKDCP78527 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PRKDCP78527 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC14.03□□□□□ -0.16
PRKDCP78527 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC14.03□□□□□ -0.16
PRKDCP78527 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC14.03□□□□□ -0.16
PRKDCP78527 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC14.03□□□□□ -0.16
PRKDCP78527 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC14.03□□□□□ -0.16
PRKDCP78527 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PRKDCP78527 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
PRKDCP78527 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PRKDCP78527 MED22-202ENST00000371999 987 ntTSL 3 BASIC14.03□□□□□ -0.16
PRKDCP78527 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PRKDCP78527 RFPL4AP1-201ENST00000530883 850 ntBASIC14.03□□□□□ -0.16
PRKDCP78527 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.03□□□□□ -0.16
PRKDCP78527 GOLGA2P6-201ENST00000340929 2049 ntBASIC14.03□□□□□ -0.16
PRKDCP78527 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PRKDCP78527 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC14.02□□□□□ -0.16
PRKDCP78527 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PRKDCP78527 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PRKDCP78527 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PRKDCP78527 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
PRKDCP78527 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PRKDCP78527 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PRKDCP78527 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC14.02□□□□□ -0.16
PRKDCP78527 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.02□□□□□ -0.16
PRKDCP78527 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.02□□□□□ -0.16
PRKDCP78527 AC079602.3-201ENST00000623931 403 ntBASIC14.02□□□□□ -0.16
PRKDCP78527 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PRKDCP78527 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
PRKDCP78527 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PRKDCP78527 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
PRKDCP78527 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PRKDCP78527 HTR5BP-201ENST00000430851 1154 ntBASIC14.02□□□□□ -0.17
PRKDCP78527 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.02□□□□□ -0.17
PRKDCP78527 SPEG-225ENST00000617028 815 ntTSL 5 BASIC14.02□□□□□ -0.17
PRKDCP78527 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PRKDCP78527 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PRKDCP78527 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PRKDCP78527 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC14.02□□□□□ -0.17
PRKDCP78527 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PRKDCP78527 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PRKDCP78527 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC14.02□□□□□ -0.17
PRKDCP78527 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
PRKDCP78527 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PRKDCP78527 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PRKDCP78527 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PRKDCP78527 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC14.01□□□□□ -0.17
PRKDCP78527 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.01□□□□□ -0.17
PRKDCP78527 SEC1P-202ENST00000473944 940 ntBASIC14.01□□□□□ -0.17
PRKDCP78527 RPL13AP23-201ENST00000480739 586 ntBASIC14.01□□□□□ -0.17
PRKDCP78527 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PRKDCP78527 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC14.01□□□□□ -0.17
PRKDCP78527 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms