Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA4P78363 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA4P78363 AC005332.1-201ENST00000577698 1310 ntBASIC16.65■□□□□ 0.26
ABCA4P78363 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA4P78363 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA4P78363 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA4P78363 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA4P78363 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA4P78363 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA4P78363 KRT8P10-201ENST00000450021 1447 ntBASIC16.65■□□□□ 0.26
ABCA4P78363 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
ABCA4P78363 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
ABCA4P78363 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.65■□□□□ 0.26
ABCA4P78363 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA4P78363 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC16.65■□□□□ 0.26
ABCA4P78363 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.65■□□□□ 0.26
ABCA4P78363 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA4P78363 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
ABCA4P78363 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.65■□□□□ 0.26
ABCA4P78363 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
ABCA4P78363 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA4P78363 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.65■□□□□ 0.26
ABCA4P78363 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.65■□□□□ 0.26
ABCA4P78363 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.65■□□□□ 0.26
ABCA4P78363 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.64■□□□□ 0.26
ABCA4P78363 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA4P78363 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
ABCA4P78363 CD37-204ENST00000535669 1674 ntTSL 2 BASIC16.64■□□□□ 0.25
ABCA4P78363 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA4P78363 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.64■□□□□ 0.25
ABCA4P78363 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.64■□□□□ 0.25
ABCA4P78363 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.64■□□□□ 0.25
ABCA4P78363 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.64■□□□□ 0.25
ABCA4P78363 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.64■□□□□ 0.25
ABCA4P78363 AL023973.1-201ENST00000624619 620 ntBASIC16.64■□□□□ 0.25
ABCA4P78363 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.64■□□□□ 0.25
ABCA4P78363 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA4P78363 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA4P78363 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
ABCA4P78363 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA4P78363 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA4P78363 AC092720.2-201ENST00000602388 1665 ntBASIC16.64■□□□□ 0.25
ABCA4P78363 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA4P78363 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA4P78363 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
ABCA4P78363 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.64■□□□□ 0.25
ABCA4P78363 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA4P78363 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA4P78363 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.63■□□□□ 0.25
ABCA4P78363 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.63■□□□□ 0.25
ABCA4P78363 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.63■□□□□ 0.25
ABCA4P78363 HYMAI.1-201ENST00000620949 238 ntBASIC16.63■□□□□ 0.25
ABCA4P78363 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
ABCA4P78363 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.63■□□□□ 0.25
ABCA4P78363 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC16.63■□□□□ 0.25
ABCA4P78363 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA4P78363 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA4P78363 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA4P78363 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.63■□□□□ 0.25
ABCA4P78363 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA4P78363 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA4P78363 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA4P78363 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA4P78363 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA4P78363 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.63■□□□□ 0.25
ABCA4P78363 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
ABCA4P78363 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.63■□□□□ 0.25
ABCA4P78363 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.63■□□□□ 0.25
ABCA4P78363 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.63■□□□□ 0.25
ABCA4P78363 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.63■□□□□ 0.25
ABCA4P78363 AC083849.1-201ENST00000615227 514 ntBASIC16.63■□□□□ 0.25
ABCA4P78363 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
ABCA4P78363 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA4P78363 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
ABCA4P78363 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.63■□□□□ 0.25
ABCA4P78363 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.62■□□□□ 0.25
ABCA4P78363 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.62■□□□□ 0.25
ABCA4P78363 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
ABCA4P78363 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA4P78363 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
ABCA4P78363 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA4P78363 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA4P78363 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.62■□□□□ 0.25
ABCA4P78363 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA4P78363 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA4P78363 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA4P78363 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA4P78363 BX119927.1-201ENST00000636596 1552 ntBASIC16.62■□□□□ 0.25
ABCA4P78363 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA4P78363 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA4P78363 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA4P78363 PCED1CP-201ENST00000419887 785 ntBASIC16.62■□□□□ 0.25
ABCA4P78363 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.62■□□□□ 0.25
ABCA4P78363 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.62■□□□□ 0.25
ABCA4P78363 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
ABCA4P78363 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA4P78363 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA4P78363 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
ABCA4P78363 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ABCA4P78363 AP005212.1-201ENST00000581547 1997 ntBASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms