Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC25.36■■□□□ 1.65
RIPK4P57078 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC25.36■■□□□ 1.65
RIPK4P57078 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
RIPK4P57078 POLI-202ENST00000406285 2030 ntTSL 2 BASIC25.36■■□□□ 1.65
RIPK4P57078 SDHAP1-207ENST00000440850 2000 ntBASIC25.36■■□□□ 1.65
RIPK4P57078 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
RIPK4P57078 UNC93B2-201ENST00000285383 730 ntBASIC25.36■■□□□ 1.65
RIPK4P57078 AC004951.3-201ENST00000418645 1148 ntBASIC25.36■■□□□ 1.65
RIPK4P57078 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC25.36■■□□□ 1.65
RIPK4P57078 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC25.36■■□□□ 1.65
RIPK4P57078 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC25.36■■□□□ 1.65
RIPK4P57078 AC011298.2-201ENST00000617989 482 ntBASIC25.36■■□□□ 1.65
RIPK4P57078 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC25.36■■□□□ 1.65
RIPK4P57078 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC25.36■■□□□ 1.65
RIPK4P57078 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
RIPK4P57078 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC25.36■■□□□ 1.65
RIPK4P57078 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
RIPK4P57078 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
RIPK4P57078 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RIPK4P57078 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
RIPK4P57078 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC25.35■■□□□ 1.65
RIPK4P57078 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
RIPK4P57078 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
RIPK4P57078 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RIPK4P57078 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC25.35■■□□□ 1.65
RIPK4P57078 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC25.35■■□□□ 1.65
RIPK4P57078 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
RIPK4P57078 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
RIPK4P57078 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC25.35■■□□□ 1.65
RIPK4P57078 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC25.35■■□□□ 1.65
RIPK4P57078 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
RIPK4P57078 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC25.35■■□□□ 1.65
RIPK4P57078 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC25.34■■□□□ 1.65
RIPK4P57078 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
RIPK4P57078 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC25.34■■□□□ 1.65
RIPK4P57078 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC25.34■■□□□ 1.65
RIPK4P57078 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RIPK4P57078 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RIPK4P57078 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
RIPK4P57078 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RIPK4P57078 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
RIPK4P57078 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
RIPK4P57078 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RIPK4P57078 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
RIPK4P57078 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC25.34■■□□□ 1.65
RIPK4P57078 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
RIPK4P57078 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC25.34■■□□□ 1.65
RIPK4P57078 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC25.33■■□□□ 1.65
RIPK4P57078 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RIPK4P57078 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
RIPK4P57078 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
RIPK4P57078 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RIPK4P57078 TP73-202ENST00000354437 2140 ntTSL 5 BASIC25.33■■□□□ 1.65
RIPK4P57078 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
RIPK4P57078 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RIPK4P57078 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC25.33■■□□□ 1.65
RIPK4P57078 GLRB-205ENST00000512619 728 ntTSL 3 BASIC25.33■■□□□ 1.65
RIPK4P57078 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
RIPK4P57078 Z82202.1-201ENST00000623446 1880 ntBASIC25.33■■□□□ 1.65
RIPK4P57078 AC073912.3-201ENST00000624414 853 ntBASIC25.33■■□□□ 1.65
RIPK4P57078 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC25.33■■□□□ 1.65
RIPK4P57078 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RIPK4P57078 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
RIPK4P57078 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.64
RIPK4P57078 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC25.32■■□□□ 1.64
RIPK4P57078 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RIPK4P57078 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RIPK4P57078 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC25.32■■□□□ 1.64
RIPK4P57078 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
RIPK4P57078 DERL1-203ENST00000419562 918 ntTSL 2 BASIC25.32■■□□□ 1.64
RIPK4P57078 AL390955.1-201ENST00000428694 934 ntBASIC25.32■■□□□ 1.64
RIPK4P57078 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RIPK4P57078 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
RIPK4P57078 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
RIPK4P57078 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RIPK4P57078 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
RIPK4P57078 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RIPK4P57078 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RIPK4P57078 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
RIPK4P57078 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
RIPK4P57078 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC25.31■■□□□ 1.64
RIPK4P57078 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC25.31■■□□□ 1.64
RIPK4P57078 ARL16-209ENST00000573715 763 ntTSL 3 BASIC25.31■■□□□ 1.64
RIPK4P57078 ARL16-211ENST00000576135 694 ntTSL 3 BASIC25.31■■□□□ 1.64
RIPK4P57078 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC25.31■■□□□ 1.64
RIPK4P57078 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RIPK4P57078 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
RIPK4P57078 AP000692.2-201ENST00000608391 879 ntBASIC25.31■■□□□ 1.64
RIPK4P57078 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC25.31■■□□□ 1.64
RIPK4P57078 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RIPK4P57078 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RIPK4P57078 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC25.31■■□□□ 1.64
RIPK4P57078 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC25.31■■□□□ 1.64
RIPK4P57078 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RIPK4P57078 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
RIPK4P57078 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
RIPK4P57078 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC25.31■■□□□ 1.64
RIPK4P57078 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC25.31■■□□□ 1.64
RIPK4P57078 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
RIPK4P57078 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC25.3■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms