Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC23.65■■□□□ 1.38
BRCA1P38398 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
BRCA1P38398 PMS2P1-201ENST00000431037 1228 ntBASIC23.65■■□□□ 1.38
BRCA1P38398 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC23.65■■□□□ 1.38
BRCA1P38398 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
BRCA1P38398 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
BRCA1P38398 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
BRCA1P38398 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
BRCA1P38398 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
BRCA1P38398 AL117328.2-201ENST00000624617 1940 ntBASIC23.65■■□□□ 1.38
BRCA1P38398 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC23.64■■□□□ 1.38
BRCA1P38398 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
BRCA1P38398 TOB2P1-201ENST00000469761 992 ntBASIC23.64■■□□□ 1.38
BRCA1P38398 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC23.64■■□□□ 1.38
BRCA1P38398 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC23.64■■□□□ 1.38
BRCA1P38398 AC011498.5-201ENST00000592027 486 ntBASIC23.64■■□□□ 1.38
BRCA1P38398 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
BRCA1P38398 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
BRCA1P38398 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC23.64■■□□□ 1.37
BRCA1P38398 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
BRCA1P38398 BID-203ENST00000399765 1879 ntTSL 2 BASIC23.64■■□□□ 1.37
BRCA1P38398 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC23.64■■□□□ 1.37
BRCA1P38398 MOK-225ENST00000522867 1883 ntTSL 5 BASIC23.64■■□□□ 1.37
BRCA1P38398 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC23.64■■□□□ 1.37
BRCA1P38398 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
BRCA1P38398 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
BRCA1P38398 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
BRCA1P38398 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
BRCA1P38398 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC23.64■■□□□ 1.37
BRCA1P38398 AKR1C7P-201ENST00000305623 895 ntBASIC23.64■■□□□ 1.37
BRCA1P38398 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
BRCA1P38398 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC23.64■■□□□ 1.37
BRCA1P38398 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
BRCA1P38398 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC23.64■■□□□ 1.37
BRCA1P38398 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC23.64■■□□□ 1.37
BRCA1P38398 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
BRCA1P38398 BX640515.1-201ENST00000617215 977 ntBASIC23.64■■□□□ 1.37
BRCA1P38398 TP73-AS1-207ENST00000624167 988 ntBASIC23.64■■□□□ 1.37
BRCA1P38398 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
BRCA1P38398 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
BRCA1P38398 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
BRCA1P38398 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
BRCA1P38398 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
BRCA1P38398 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
BRCA1P38398 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
BRCA1P38398 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
BRCA1P38398 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
BRCA1P38398 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC23.63■■□□□ 1.37
BRCA1P38398 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
BRCA1P38398 KRT16P4-201ENST00000453883 522 ntBASIC23.63■■□□□ 1.37
BRCA1P38398 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC23.63■■□□□ 1.37
BRCA1P38398 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
BRCA1P38398 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC23.63■■□□□ 1.37
BRCA1P38398 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC23.63■■□□□ 1.37
BRCA1P38398 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC23.63■■□□□ 1.37
BRCA1P38398 AL121912.1-201ENST00000603683 238 ntBASIC23.63■■□□□ 1.37
BRCA1P38398 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
BRCA1P38398 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
BRCA1P38398 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
BRCA1P38398 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC23.63■■□□□ 1.37
BRCA1P38398 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
BRCA1P38398 LSR-203ENST00000360798 1963 ntTSL 2 BASIC23.63■■□□□ 1.37
BRCA1P38398 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC23.63■■□□□ 1.37
BRCA1P38398 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
BRCA1P38398 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
BRCA1P38398 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
BRCA1P38398 NME4-212ENST00000621774 904 ntTSL 3 BASIC23.62■■□□□ 1.37
BRCA1P38398 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
BRCA1P38398 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.62■■□□□ 1.37
BRCA1P38398 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
BRCA1P38398 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC23.62■■□□□ 1.37
BRCA1P38398 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
BRCA1P38398 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC23.62■■□□□ 1.37
BRCA1P38398 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
BRCA1P38398 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
BRCA1P38398 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
BRCA1P38398 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC23.62■■□□□ 1.37
BRCA1P38398 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC23.62■■□□□ 1.37
BRCA1P38398 AC079602.3-201ENST00000623931 403 ntBASIC23.62■■□□□ 1.37
BRCA1P38398 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
BRCA1P38398 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
BRCA1P38398 AC006128.1-201ENST00000624704 1661 ntBASIC23.61■■□□□ 1.37
BRCA1P38398 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
BRCA1P38398 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC23.61■■□□□ 1.37
BRCA1P38398 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
BRCA1P38398 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC23.61■■□□□ 1.37
BRCA1P38398 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC23.61■■□□□ 1.37
BRCA1P38398 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
BRCA1P38398 AC074051.2-201ENST00000565115 352 ntBASIC23.61■■□□□ 1.37
BRCA1P38398 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC23.61■■□□□ 1.37
BRCA1P38398 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC23.61■■□□□ 1.37
BRCA1P38398 FEM1AP4-201ENST00000443167 1987 ntBASIC23.61■■□□□ 1.37
BRCA1P38398 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
BRCA1P38398 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
BRCA1P38398 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
BRCA1P38398 AC092720.2-201ENST00000602388 1665 ntBASIC23.6■■□□□ 1.37
BRCA1P38398 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC23.6■■□□□ 1.37
BRCA1P38398 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
BRCA1P38398 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
BRCA1P38398 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms