Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
USF1P22415 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
USF1P22415 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
USF1P22415 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
USF1P22415 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.38■□□□□ 0.21
USF1P22415 ATP5G1P1-201ENST00000448724 379 ntBASIC16.38■□□□□ 0.21
USF1P22415 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.38■□□□□ 0.21
USF1P22415 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.38■□□□□ 0.21
USF1P22415 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
USF1P22415 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
USF1P22415 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.38■□□□□ 0.21
USF1P22415 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 TFP1-202ENST00000475455 1573 ntBASIC16.38■□□□□ 0.21
USF1P22415 ADM-207ENST00000530439 1839 ntTSL 2 BASIC16.38■□□□□ 0.21
USF1P22415 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC16.38■□□□□ 0.21
USF1P22415 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 STK25-204ENST00000405585 1643 ntTSL 2 BASIC16.37■□□□□ 0.21
USF1P22415 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
USF1P22415 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
USF1P22415 AC018553.1-201ENST00000616682 1458 ntBASIC16.37■□□□□ 0.21
USF1P22415 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
USF1P22415 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
USF1P22415 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
USF1P22415 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
USF1P22415 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
USF1P22415 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.37■□□□□ 0.21
USF1P22415 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
USF1P22415 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.37■□□□□ 0.21
USF1P22415 KRT18P16-201ENST00000510337 1294 ntBASIC16.37■□□□□ 0.21
USF1P22415 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.37■□□□□ 0.21
USF1P22415 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.37■□□□□ 0.21
USF1P22415 AP005242.2-201ENST00000580065 1175 ntBASIC16.37■□□□□ 0.21
USF1P22415 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC16.37■□□□□ 0.21
USF1P22415 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
USF1P22415 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
USF1P22415 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
USF1P22415 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
USF1P22415 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
USF1P22415 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
USF1P22415 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.37■□□□□ 0.21
USF1P22415 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC16.36■□□□□ 0.21
USF1P22415 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 AL162377.1-201ENST00000618844 1793 ntBASIC16.36■□□□□ 0.21
USF1P22415 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC16.36■□□□□ 0.21
USF1P22415 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 AC007952.6-201ENST00000573168 2673 ntBASIC16.36■□□□□ 0.21
USF1P22415 AC003957.1-201ENST00000625108 2673 ntBASIC16.36■□□□□ 0.21
USF1P22415 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
USF1P22415 B3GAT3P1-201ENST00000471720 806 ntBASIC16.36■□□□□ 0.21
USF1P22415 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.36■□□□□ 0.21
USF1P22415 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 EGLN1P1-201ENST00000531623 762 ntBASIC16.36■□□□□ 0.21
USF1P22415 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.36■□□□□ 0.21
USF1P22415 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC16.36■□□□□ 0.21
USF1P22415 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
USF1P22415 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
USF1P22415 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC16.36■□□□□ 0.21
USF1P22415 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.36■□□□□ 0.21
USF1P22415 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
USF1P22415 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.36■□□□□ 0.21
USF1P22415 AC073508.3-201ENST00000619697 1419 ntBASIC16.36■□□□□ 0.21
USF1P22415 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
USF1P22415 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
USF1P22415 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
USF1P22415 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
USF1P22415 AL512408.1-201ENST00000569378 2000 ntBASIC16.35■□□□□ 0.21
USF1P22415 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
USF1P22415 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
USF1P22415 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
USF1P22415 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
USF1P22415 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
USF1P22415 MESTP1-201ENST00000404287 994 ntBASIC16.35■□□□□ 0.21
USF1P22415 CRYGFP-201ENST00000418459 633 ntBASIC16.35■□□□□ 0.21
USF1P22415 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
USF1P22415 AC128688.1-201ENST00000487626 519 ntBASIC16.35■□□□□ 0.21
USF1P22415 AC097488.1-201ENST00000507834 756 ntBASIC16.35■□□□□ 0.21
USF1P22415 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC16.35■□□□□ 0.21
USF1P22415 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.35■□□□□ 0.21
USF1P22415 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
USF1P22415 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.35■□□□□ 0.21
USF1P22415 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
USF1P22415 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms