Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SLC25A22-202ENST00000456706 606 ntTSL 423.85■■□□□ 1.411e-8■■■□□ 14.7
YBX3P16989 SLC25A22-230ENST00000629634 579 ntTSL 323.69■■□□□ 1.381e-8■■■□□ 14.7
YBX3P16989 SLC25A22-221ENST00000532459 578 ntTSL 223.68■■□□□ 1.381e-8■■■□□ 14.7
YBX3P16989 SLC25A22-212ENST00000528936 569 ntTSL 523.56■■□□□ 1.361e-8■■■□□ 14.7
YBX3P16989 SLC25A22-223ENST00000533385 746 ntTSL 523.56■■□□□ 1.361e-8■■■□□ 14.7
YBX3P16989 SLC25A22-226ENST00000625752 709 ntTSL 523.26■■□□□ 1.311e-8■■■□□ 14.7
YBX3P16989 SLC25A22-213ENST00000529066 558 ntTSL 421.9■■□□□ 1.11e-8■■■□□ 14.7
YBX3P16989 SLC25A22-206ENST00000525644 492 ntTSL 421.58■■□□□ 1.051e-8■■■□□ 14.7
YBX3P16989 SLC25A22-225ENST00000625419 816 ntTSL 520.59■□□□□ 0.891e-8■■■□□ 14.7
YBX3P16989 SLC25A22-227ENST00000627843 1021 ntTSL 220.59■□□□□ 0.891e-8■■■□□ 14.7
YBX3P16989 SLC25A22-211ENST00000528606 741 ntTSL 520.59■□□□□ 0.891e-8■■■□□ 14.7
YBX3P16989 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.861e-8■■■□□ 14.7
YBX3P16989 SLC25A22-222ENST00000532484 839 ntTSL 519.83■□□□□ 0.771e-8■■■□□ 14.7
YBX3P16989 SLC25A22-219ENST00000531534 824 ntTSL 519.83■□□□□ 0.771e-8■■■□□ 14.7
YBX3P16989 SLC25A22-203ENST00000481290 1108 ntTSL 519.71■□□□□ 0.751e-8■■■□□ 14.7
YBX3P16989 SLC25A22-218ENST00000531514 641 ntTSL 419.59■□□□□ 0.731e-8■■■□□ 14.7
YBX3P16989 SLC25A22-224ENST00000625316 608 ntTSL 419.1■□□□□ 0.651e-8■■■□□ 14.7
YBX3P16989 SLC25A22-204ENST00000524891 560 ntTSL 218.99■□□□□ 0.631e-8■■■□□ 14.7
YBX3P16989 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.291e-8■■■□□ 14.7
YBX3P16989 SLC25A22-209ENST00000527723 666 ntTSL 416.64■□□□□ 0.251e-8■■■□□ 14.7
YBX3P16989 SLC25A22-207ENST00000526152 565 ntTSL 415.08■□□□□ 01e-8■■■□□ 14.7
YBX3P16989 SLC25A22-210ENST00000527734 583 ntTSL 413.61□□□□□ -0.231e-8■■■□□ 14.7
YBX3P16989 XPO6-206ENST00000564905 835 ntTSL 317.71■□□□□ 0.431e-11■■■□□ 14.7
YBX3P16989 XPO6-203ENST00000562408 709 ntTSL 514.36□□□□□ -0.111e-11■■■□□ 14.7
YBX3P16989 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.11■□□□□ 0.973e-6■■■□□ 14.7
YBX3P16989 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.323e-6■■■□□ 14.7
YBX3P16989 PARP16-204ENST00000559805 678 ntTSL 210.7□□□□□ -0.73e-6■■■□□ 14.7
YBX3P16989 ATXN7L3-210ENST00000591295 3017 ntTSL 513.04□□□□□ -0.321e-6■■■□□ 14.7
YBX3P16989 ATXN7L3-202ENST00000454077 3523 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.441e-6■■■□□ 14.7
YBX3P16989 ATXN7L3-201ENST00000389384 3811 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.711e-6■■■□□ 14.7
YBX3P16989 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.541e-6■■■□□ 14.7
YBX3P16989 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.481e-6■■■□□ 14.7
YBX3P16989 MGA-204ENST00000563576 3537 ntTSL 513.6□□□□□ -0.238e-7■■■□□ 14.7
YBX3P16989 MGA-208ENST00000566718 3439 ntTSL 29.83□□□□□ -0.848e-7■■■□□ 14.7
YBX3P16989 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.156e-7■■■□□ 14.7
YBX3P16989 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.728e-7■■■□□ 14.7
YBX3P16989 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.92□□□□□ -1.788e-7■■■□□ 14.7
YBX3P16989 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.85□□□□□ -1.798e-7■■■□□ 14.7
YBX3P16989 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.828e-7■■■□□ 14.7
YBX3P16989 ATXN2L-213ENST00000564162 770 ntTSL 524.21■■□□□ 1.478e-15■■■□□ 14.7
YBX3P16989 ATXN2L-219ENST00000566007 471 ntTSL 312.33□□□□□ -0.448e-15■■■□□ 14.7
YBX3P16989 PTDSS1-203ENST00000517557 757 ntTSL 231.15■■■□□ 2.581e-8■■■□□ 14.7
YBX3P16989 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.028e-7■■■□□ 14.7
YBX3P16989 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.29■■■□□ 2.443e-7■■■□□ 14.7
YBX3P16989 CTDSP2-207ENST00000551594 900 ntTSL 323.69■■□□□ 1.383e-7■■■□□ 14.7
YBX3P16989 CTDSP2-206ENST00000550144 544 ntTSL 413.69□□□□□ -0.223e-7■■■□□ 14.7
YBX3P16989 TBC1D14-201ENST00000409757 4925 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.383e-7■■■□□ 14.7
YBX3P16989 TBC1D14-207ENST00000448507 4887 ntAPPRIS P3 TSL 5 BASIC10.79□□□□□ -0.683e-7■■■□□ 14.7
YBX3P16989 PRRC2C-204ENST00000426496 10175 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.681e-7■■■□□ 14.7
YBX3P16989 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC8.04□□□□□ -1.121e-7■■■□□ 14.7
YBX3P16989 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.321e-7■■■□□ 14.7
YBX3P16989 EFTUD2-206ENST00000586654 585 ntTSL 212.95□□□□□ -0.344e-11■■■□□ 14.7
YBX3P16989 EFTUD2-221ENST00000591856 366 ntTSL 310.21□□□□□ -0.774e-11■■■□□ 14.7
YBX3P16989 RALBP1-205ENST00000585015 945 ntTSL 332.28■■■□□ 2.761e-7■■■□□ 14.7
YBX3P16989 RALBP1-203ENST00000458039 836 ntTSL 316.22■□□□□ 0.191e-7■■■□□ 14.7
YBX3P16989 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.38■□□□□ 0.692e-10■■■□□ 14.7
YBX3P16989 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.42e-10■■■□□ 14.7
YBX3P16989 SLC25A23-205ENST00000595267 742 ntTSL 233.98■■■■□ 3.033e-10■■■□□ 14.7
YBX3P16989 SLC25A23-208ENST00000597307 557 ntTSL 414.63□□□□□ -0.073e-10■■■□□ 14.7
YBX3P16989 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.555e-7■■■□□ 14.7
YBX3P16989 QARS-212ENST00000470225 691 ntTSL 518.61■□□□□ 0.571e-14■■■□□ 14.7
YBX3P16989 QARS-222ENST00000494838 959 ntTSL 315.98■□□□□ 0.151e-14■■■□□ 14.7
YBX3P16989 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.092e-7■■■□□ 14.7
YBX3P16989 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.22e-7■■■□□ 14.7
YBX3P16989 SOCS2-208ENST00000549510 581 ntTSL 28.22□□□□□ -1.093e-8■■■□□ 14.7
YBX3P16989 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.481e-8■■■□□ 14.7
YBX3P16989 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.131e-8■■■□□ 14.7
YBX3P16989 TRRAP-205ENST00000456197 11654 ntAPPRIS ALT2 TSL 1 (best)7.62□□□□□ -1.193e-7■■■□□ 14.7
YBX3P16989 ATIC-209ENST00000446622 615 ntTSL 36.99□□□□□ -1.298e-7■■■□□ 14.7
YBX3P16989 TALDO1-202ENST00000528070 856 ntTSL 523.58■■□□□ 1.377e-12■■■□□ 14.7
YBX3P16989 ZMYND8-215ENST00000468376 4064 ntTSL 1 (best)10.59□□□□□ -0.713e-7■■■□□ 14.7
YBX3P16989 SNX9-202ENST00000614703 542 ntTSL 413.73□□□□□ -0.211e-6■■■□□ 14.7
YBX3P16989 SNX9-203ENST00000614800 553 ntTSL 47.96□□□□□ -1.141e-6■■■□□ 14.7
YBX3P16989 SLC2A3-208ENST00000541671 590 ntTSL 216.76■□□□□ 0.279e-7■■■□□ 14.7
YBX3P16989 SLC2A3-207ENST00000495813 1784 ntTSL 210.5□□□□□ -0.739e-7■■■□□ 14.7
YBX3P16989 SLC2A3-203ENST00000476634 763 ntTSL 28.68□□□□□ -1.029e-7■■■□□ 14.7
YBX3P16989 SLC2A3-210ENST00000544291 577 ntTSL 58.02□□□□□ -1.139e-7■■■□□ 14.7
YBX3P16989 SLC2A3-211ENST00000544936 589 ntTSL 46.68□□□□□ -1.349e-7■■■□□ 14.7
YBX3P16989 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.887e-8■■■□□ 14.7
YBX3P16989 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.67e-8■■■□□ 14.7
YBX3P16989 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.37■□□□□ 0.212e-37■■■□□ 14.6
YBX3P16989 TUBB-208ENST00000396389 2903 ntTSL 5 BASIC12□□□□□ -0.492e-37■■■□□ 14.6
YBX3P16989 TUBB-207ENST00000396384 2823 ntTSL 3 BASIC11.4□□□□□ -0.582e-37■■■□□ 14.6
YBX3P16989 TOMM20-201ENST00000366607 3387 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.584e-17■■■□□ 14.6
YBX3P16989 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.416e-8■■■□□ 14.6
YBX3P16989 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.336e-8■■■□□ 14.6
YBX3P16989 PRICKLE3-205ENST00000540849 2246 ntTSL 213.48□□□□□ -0.256e-8■■■□□ 14.6
YBX3P16989 RPLP0-206ENST00000546990 770 ntTSL 318.32■□□□□ 0.521e-88■■■□□ 14.6
YBX3P16989 MFF-208ENST00000409616 1247 ntTSL 5 BASIC27.78■■■□□ 2.045e-8■■■□□ 14.6
YBX3P16989 MFF-207ENST00000409565 1548 ntTSL 2 BASIC26.86■■□□□ 1.895e-8■■■□□ 14.6
YBX3P16989 MFF-205ENST00000354503 1085 ntTSL 2 BASIC26.05■■□□□ 1.765e-8■■■□□ 14.6
YBX3P16989 MFF-203ENST00000349901 1716 ntTSL 2 BASIC24.15■■□□□ 1.465e-8■■■□□ 14.6
YBX3P16989 MFF-223ENST00000524634 647 ntTSL 2 BASIC20.86■□□□□ 0.935e-8■■■□□ 14.6
YBX3P16989 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.925e-8■■■□□ 14.6
YBX3P16989 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.61■□□□□ 0.735e-8■■■□□ 14.6
YBX3P16989 MFF-219ENST00000476924 820 ntTSL 219.18■□□□□ 0.665e-8■■■□□ 14.6
YBX3P16989 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.66■□□□□ 0.585e-8■■■□□ 14.6
YBX3P16989 MFF-216ENST00000460756 3524 ntTSL 512.08□□□□□ -0.485e-8■■■□□ 14.6
YBX3P16989 MFF-206ENST00000392059 1710 ntTSL 5 BASIC5.33□□□□□ -1.565e-8■■■□□ 14.6
YBX3P16989 ATP5A1-218ENST00000592364 576 ntTSL 518.18■□□□□ 0.53e-10■■■□□ 14.6
Retrieved 100 of 29,075 protein–RNA pairs in 843.9 ms