Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
RB1P06400 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
RB1P06400 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RB1P06400 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
RB1P06400 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.5■□□□□ 0.87
RB1P06400 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RB1P06400 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
RB1P06400 NPAP1P7-201ENST00000613027 823 ntBASIC20.5■□□□□ 0.87
RB1P06400 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.5■□□□□ 0.87
RB1P06400 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.5■□□□□ 0.87
RB1P06400 AC012313.10-201ENST00000623509 926 ntBASIC20.5■□□□□ 0.87
RB1P06400 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.5■□□□□ 0.87
RB1P06400 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RB1P06400 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RB1P06400 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
RB1P06400 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RB1P06400 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.49■□□□□ 0.87
RB1P06400 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RB1P06400 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RB1P06400 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RB1P06400 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RB1P06400 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RB1P06400 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RB1P06400 SPDYE15P-201ENST00000424157 909 ntBASIC20.49■□□□□ 0.87
RB1P06400 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.49■□□□□ 0.87
RB1P06400 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RB1P06400 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.49■□□□□ 0.87
RB1P06400 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RB1P06400 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RB1P06400 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RB1P06400 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RB1P06400 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.49■□□□□ 0.87
RB1P06400 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RB1P06400 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RB1P06400 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.48■□□□□ 0.87
RB1P06400 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RB1P06400 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.48■□□□□ 0.87
RB1P06400 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RB1P06400 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.48■□□□□ 0.87
RB1P06400 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.48■□□□□ 0.87
RB1P06400 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RB1P06400 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 FEM1AP1-201ENST00000431297 1995 ntBASIC20.48■□□□□ 0.87
RB1P06400 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RB1P06400 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RB1P06400 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RB1P06400 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RB1P06400 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RB1P06400 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.47■□□□□ 0.87
RB1P06400 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RB1P06400 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
RB1P06400 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.47■□□□□ 0.87
RB1P06400 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.47■□□□□ 0.87
RB1P06400 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RB1P06400 HBZP1-201ENST00000354915 429 ntBASIC20.47■□□□□ 0.87
RB1P06400 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
RB1P06400 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.47■□□□□ 0.87
RB1P06400 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
RB1P06400 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.47■□□□□ 0.87
RB1P06400 MIR3652-201ENST00000579335 131 ntBASIC20.47■□□□□ 0.87
RB1P06400 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.47■□□□□ 0.87
RB1P06400 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RB1P06400 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RB1P06400 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.47■□□□□ 0.87
RB1P06400 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RB1P06400 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
RB1P06400 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RB1P06400 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.46■□□□□ 0.87
RB1P06400 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RB1P06400 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.46■□□□□ 0.87
RB1P06400 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.46■□□□□ 0.87
RB1P06400 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RB1P06400 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RB1P06400 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.46■□□□□ 0.87
RB1P06400 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RB1P06400 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.46■□□□□ 0.87
RB1P06400 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
RB1P06400 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RB1P06400 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.46■□□□□ 0.87
RB1P06400 SPDYE13P-201ENST00000445314 798 ntBASIC20.46■□□□□ 0.87
RB1P06400 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
RB1P06400 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.46■□□□□ 0.87
RB1P06400 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms