Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TNFP01375 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
TNFP01375 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TNFP01375 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
TNFP01375 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TNFP01375 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TNFP01375 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.9■□□□□ 0.62
TNFP01375 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
TNFP01375 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.9■□□□□ 0.62
TNFP01375 AC010203.1-204ENST00000548782 407 ntBASIC18.9■□□□□ 0.62
TNFP01375 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TNFP01375 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TNFP01375 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TNFP01375 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TNFP01375 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.9■□□□□ 0.62
TNFP01375 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
TNFP01375 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.9■□□□□ 0.62
TNFP01375 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.9■□□□□ 0.62
TNFP01375 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TNFP01375 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TNFP01375 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
TNFP01375 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
TNFP01375 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
TNFP01375 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
TNFP01375 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
TNFP01375 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.89■□□□□ 0.62
TNFP01375 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TNFP01375 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
TNFP01375 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TNFP01375 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.89■□□□□ 0.61
TNFP01375 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
TNFP01375 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.89■□□□□ 0.61
TNFP01375 HMGA1P5-201ENST00000412453 271 ntBASIC18.89■□□□□ 0.61
TNFP01375 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TNFP01375 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TNFP01375 TSPY17P-201ENST00000450329 467 ntBASIC18.89■□□□□ 0.61
TNFP01375 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.89■□□□□ 0.61
TNFP01375 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.89■□□□□ 0.61
TNFP01375 CKBP1-201ENST00000565489 1086 ntBASIC18.89■□□□□ 0.61
TNFP01375 AL590326.2-201ENST00000625139 305 ntBASIC18.89■□□□□ 0.61
TNFP01375 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TNFP01375 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TNFP01375 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TNFP01375 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
TNFP01375 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TNFP01375 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TNFP01375 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.89■□□□□ 0.61
TNFP01375 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.88■□□□□ 0.61
TNFP01375 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.88■□□□□ 0.61
TNFP01375 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.88■□□□□ 0.61
TNFP01375 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
TNFP01375 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
TNFP01375 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TNFP01375 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.88■□□□□ 0.61
TNFP01375 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.88■□□□□ 0.61
TNFP01375 FAM87A-204ENST00000613235 858 ntBASIC18.88■□□□□ 0.61
TNFP01375 AC010653.2-201ENST00000623505 997 ntBASIC18.88■□□□□ 0.61
TNFP01375 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.88■□□□□ 0.61
TNFP01375 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.88■□□□□ 0.61
TNFP01375 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.88■□□□□ 0.61
TNFP01375 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
TNFP01375 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
TNFP01375 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TNFP01375 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
TNFP01375 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TNFP01375 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
TNFP01375 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.87■□□□□ 0.61
TNFP01375 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TNFP01375 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
TNFP01375 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
TNFP01375 CA15P1-201ENST00000481698 905 ntBASIC18.87■□□□□ 0.61
TNFP01375 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
TNFP01375 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.87■□□□□ 0.61
TNFP01375 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
TNFP01375 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TNFP01375 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TNFP01375 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
TNFP01375 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.87■□□□□ 0.61
TNFP01375 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.87■□□□□ 0.61
TNFP01375 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
TNFP01375 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.87■□□□□ 0.61
TNFP01375 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.87■□□□□ 0.61
TNFP01375 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms