Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 TCF3P1-201ENST00000423021 1937 ntBASIC19.72■□□□□ 0.75
HOXC11O43248 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
HOXC11O43248 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC11O43248 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC11O43248 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXC11O43248 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
HOXC11O43248 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
HOXC11O43248 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC11O43248 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC11O43248 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXC11O43248 KRT8P11-201ENST00000409686 1436 ntBASIC19.71■□□□□ 0.75
HOXC11O43248 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC11O43248 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HOXC11O43248 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC11O43248 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC11O43248 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
HOXC11O43248 AK4P3-201ENST00000418260 669 ntBASIC19.71■□□□□ 0.75
HOXC11O43248 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.71■□□□□ 0.75
HOXC11O43248 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC11O43248 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC11O43248 WWOX-216ENST00000569818 525 ntBASIC19.71■□□□□ 0.75
HOXC11O43248 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
HOXC11O43248 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC11O43248 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC11O43248 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
HOXC11O43248 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC11O43248 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC11O43248 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HOXC11O43248 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXC11O43248 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
HOXC11O43248 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXC11O43248 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.7■□□□□ 0.74
HOXC11O43248 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 AC117947.1-201ENST00000427448 529 ntBASIC19.7■□□□□ 0.74
HOXC11O43248 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
HOXC11O43248 AL512604.3-201ENST00000569583 964 ntBASIC19.7■□□□□ 0.74
HOXC11O43248 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.7■□□□□ 0.74
HOXC11O43248 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXC11O43248 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXC11O43248 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC11O43248 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.7■□□□□ 0.74
HOXC11O43248 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC11O43248 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC11O43248 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
HOXC11O43248 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC11O43248 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC11O43248 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HOXC11O43248 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
HOXC11O43248 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.69■□□□□ 0.74
HOXC11O43248 AC063952.2-201ENST00000498792 1227 ntBASIC19.69■□□□□ 0.74
HOXC11O43248 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.69■□□□□ 0.74
HOXC11O43248 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.69■□□□□ 0.74
HOXC11O43248 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
HOXC11O43248 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC11O43248 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
HOXC11O43248 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
HOXC11O43248 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC11O43248 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
HOXC11O43248 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC11O43248 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC11O43248 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC11O43248 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC11O43248 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
HOXC11O43248 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC11O43248 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC11O43248 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC11O43248 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC11O43248 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC11O43248 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC11O43248 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
HOXC11O43248 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.68■□□□□ 0.74
HOXC11O43248 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
HOXC11O43248 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXC11O43248 AC022616.7-201ENST00000525383 220 ntBASIC19.68■□□□□ 0.74
HOXC11O43248 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXC11O43248 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.68■□□□□ 0.74
HOXC11O43248 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.68■□□□□ 0.74
HOXC11O43248 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC11O43248 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC11O43248 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HOXC11O43248 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXC11O43248 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC11O43248 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
HOXC11O43248 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC11O43248 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC11O43248 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
HOXC11O43248 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms