Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.8■□□□□ 0.76
CBX4O00257 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.8■□□□□ 0.76
CBX4O00257 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CBX4O00257 NUDT16P1-203ENST00000513809 620 ntBASIC19.8■□□□□ 0.76
CBX4O00257 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CBX4O00257 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.8■□□□□ 0.76
CBX4O00257 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.8■□□□□ 0.76
CBX4O00257 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CBX4O00257 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CBX4O00257 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CBX4O00257 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CBX4O00257 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.79■□□□□ 0.76
CBX4O00257 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.79■□□□□ 0.76
CBX4O00257 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.79■□□□□ 0.76
CBX4O00257 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CBX4O00257 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.79■□□□□ 0.76
CBX4O00257 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.79■□□□□ 0.76
CBX4O00257 AC087499.1-201ENST00000418141 1075 ntBASIC19.79■□□□□ 0.76
CBX4O00257 AC004980.1-204ENST00000429707 299 ntBASIC19.79■□□□□ 0.76
CBX4O00257 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.79■□□□□ 0.76
CBX4O00257 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.79■□□□□ 0.76
CBX4O00257 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.79■□□□□ 0.76
CBX4O00257 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.79■□□□□ 0.76
CBX4O00257 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.79■□□□□ 0.76
CBX4O00257 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
CBX4O00257 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CBX4O00257 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CBX4O00257 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CBX4O00257 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CBX4O00257 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CBX4O00257 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CBX4O00257 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CBX4O00257 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CBX4O00257 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.78■□□□□ 0.76
CBX4O00257 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.78■□□□□ 0.76
CBX4O00257 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.78■□□□□ 0.76
CBX4O00257 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CBX4O00257 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.78■□□□□ 0.76
CBX4O00257 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.78■□□□□ 0.76
CBX4O00257 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CBX4O00257 AL355075.4-201ENST00000554988 638 ntBASIC19.78■□□□□ 0.76
CBX4O00257 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
CBX4O00257 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.78■□□□□ 0.76
CBX4O00257 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CBX4O00257 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.78■□□□□ 0.76
CBX4O00257 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CBX4O00257 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.78■□□□□ 0.76
CBX4O00257 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CBX4O00257 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CBX4O00257 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.78■□□□□ 0.76
CBX4O00257 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CBX4O00257 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
CBX4O00257 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.77■□□□□ 0.76
CBX4O00257 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CBX4O00257 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.77■□□□□ 0.76
CBX4O00257 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CBX4O00257 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CBX4O00257 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.77■□□□□ 0.76
CBX4O00257 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.77■□□□□ 0.76
CBX4O00257 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.77■□□□□ 0.76
CBX4O00257 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CBX4O00257 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.77■□□□□ 0.76
CBX4O00257 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.77■□□□□ 0.76
CBX4O00257 REXO1L10P-201ENST00000615707 1290 ntBASIC19.77■□□□□ 0.76
CBX4O00257 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CBX4O00257 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.77■□□□□ 0.76
CBX4O00257 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.77■□□□□ 0.76
CBX4O00257 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CBX4O00257 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.77■□□□□ 0.76
CBX4O00257 TREX1-205ENST00000625293 1783 ntBASIC19.77■□□□□ 0.76
CBX4O00257 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.77■□□□□ 0.76
CBX4O00257 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CBX4O00257 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.77■□□□□ 0.75
CBX4O00257 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.76■□□□□ 0.75
CBX4O00257 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CBX4O00257 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.76■□□□□ 0.75
CBX4O00257 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CBX4O00257 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CBX4O00257 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.76■□□□□ 0.75
CBX4O00257 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CBX4O00257 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CBX4O00257 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.76■□□□□ 0.75
CBX4O00257 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CBX4O00257 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.76■□□□□ 0.75
CBX4O00257 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.76■□□□□ 0.75
CBX4O00257 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.76■□□□□ 0.75
CBX4O00257 AL160286.2-201ENST00000567150 934 ntBASIC19.76■□□□□ 0.75
CBX4O00257 AC026271.3-201ENST00000571884 352 ntBASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms