Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.39■□□□□ 0.53
PDLIM1O00151 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.39■□□□□ 0.53
PDLIM1O00151 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM1O00151 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM1O00151 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM1O00151 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM1O00151 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM1O00151 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM1O00151 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.39■□□□□ 0.53
PDLIM1O00151 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM1O00151 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM1O00151 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM1O00151 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM1O00151 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM1O00151 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
PDLIM1O00151 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM1O00151 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.39■□□□□ 0.53
PDLIM1O00151 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM1O00151 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM1O00151 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM1O00151 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM1O00151 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.38■□□□□ 0.53
PDLIM1O00151 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
PDLIM1O00151 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM1O00151 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.38■□□□□ 0.53
PDLIM1O00151 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
PDLIM1O00151 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.38■□□□□ 0.53
PDLIM1O00151 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM1O00151 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM1O00151 AC026185.1-201ENST00000445748 174 ntBASIC18.38■□□□□ 0.53
PDLIM1O00151 AC007322.4-201ENST00000509611 723 ntBASIC18.38■□□□□ 0.53
PDLIM1O00151 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.38■□□□□ 0.53
PDLIM1O00151 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.38■□□□□ 0.53
PDLIM1O00151 AC231657.2-201ENST00000624556 255 ntBASIC18.38■□□□□ 0.53
PDLIM1O00151 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM1O00151 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM1O00151 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM1O00151 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.38■□□□□ 0.53
PDLIM1O00151 AC106820.2-201ENST00000563775 3264 ntBASIC18.38■□□□□ 0.53
PDLIM1O00151 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.37■□□□□ 0.53
PDLIM1O00151 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.37■□□□□ 0.53
PDLIM1O00151 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.37■□□□□ 0.53
PDLIM1O00151 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
PDLIM1O00151 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PDLIM1O00151 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.37■□□□□ 0.53
PDLIM1O00151 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.37■□□□□ 0.53
PDLIM1O00151 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.37■□□□□ 0.53
PDLIM1O00151 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.37■□□□□ 0.53
PDLIM1O00151 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM1O00151 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.36■□□□□ 0.53
PDLIM1O00151 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
PDLIM1O00151 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.36■□□□□ 0.53
PDLIM1O00151 AC007322.3-201ENST00000426526 701 ntBASIC18.36■□□□□ 0.53
PDLIM1O00151 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 MST1L-201ENST00000442552 2185 ntBASIC18.36■□□□□ 0.53
PDLIM1O00151 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.36■□□□□ 0.53
PDLIM1O00151 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
PDLIM1O00151 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.36■□□□□ 0.53
PDLIM1O00151 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.36■□□□□ 0.53
PDLIM1O00151 AC013268.1-206ENST00000638368 961 ntBASIC18.36■□□□□ 0.53
PDLIM1O00151 AC112229.1-201ENST00000639295 961 ntBASIC18.36■□□□□ 0.53
PDLIM1O00151 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.36■□□□□ 0.53
PDLIM1O00151 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM1O00151 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
PDLIM1O00151 AC009053.2-201ENST00000563701 2365 ntBASIC18.35■□□□□ 0.53
PDLIM1O00151 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM1O00151 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM1O00151 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM1O00151 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.35■□□□□ 0.53
PDLIM1O00151 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM1O00151 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM1O00151 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM1O00151 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms