Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A5A8TX70 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL6A5A8TX70 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A5A8TX70 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC15.07■□□□□ 0
COL6A5A8TX70 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A5A8TX70 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC15.07■□□□□ 0
COL6A5A8TX70 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.07■□□□□ 0
COL6A5A8TX70 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
COL6A5A8TX70 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL6A5A8TX70 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A5A8TX70 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL6A5A8TX70 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL6A5A8TX70 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC15.07■□□□□ 0
COL6A5A8TX70 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
COL6A5A8TX70 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC15.06■□□□□ 0
COL6A5A8TX70 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
COL6A5A8TX70 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.06■□□□□ 0
COL6A5A8TX70 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.06■□□□□ 0
COL6A5A8TX70 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.06■□□□□ 0
COL6A5A8TX70 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.06■□□□□ 0
COL6A5A8TX70 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC15.06■□□□□ 0
COL6A5A8TX70 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
COL6A5A8TX70 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC15.06■□□□□ 0
COL6A5A8TX70 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
COL6A5A8TX70 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.06■□□□□ 0
COL6A5A8TX70 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.06■□□□□ 0
COL6A5A8TX70 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC15.06■□□□□ 0
COL6A5A8TX70 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.06■□□□□ 0
COL6A5A8TX70 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A5A8TX70 AL121603.2-201ENST00000557373 2117 ntBASIC15.06■□□□□ 0
COL6A5A8TX70 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC15.05■□□□□ 0
COL6A5A8TX70 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC15.05■□□□□ 0
COL6A5A8TX70 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
COL6A5A8TX70 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
COL6A5A8TX70 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC15.05■□□□□ 0
COL6A5A8TX70 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC15.05■□□□□ 0
COL6A5A8TX70 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.05■□□□□ 0
COL6A5A8TX70 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
COL6A5A8TX70 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
COL6A5A8TX70 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A5A8TX70 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A5A8TX70 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A5A8TX70 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC15.05■□□□□ -0
COL6A5A8TX70 C1orf229-201ENST00000623686 2258 ntBASIC15.05■□□□□ -0
COL6A5A8TX70 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A5A8TX70 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC15.05■□□□□ -0
COL6A5A8TX70 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A5A8TX70 UPF3AP3-201ENST00000420996 769 ntBASIC15.05■□□□□ -0
COL6A5A8TX70 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL6A5A8TX70 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.05■□□□□ -0
COL6A5A8TX70 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.05■□□□□ -0
COL6A5A8TX70 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.05■□□□□ -0
COL6A5A8TX70 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.05■□□□□ -0
COL6A5A8TX70 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
COL6A5A8TX70 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A5A8TX70 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A5A8TX70 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL6A5A8TX70 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC15.04■□□□□ -0
COL6A5A8TX70 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A5A8TX70 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A5A8TX70 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
COL6A5A8TX70 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.04■□□□□ -0
COL6A5A8TX70 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A5A8TX70 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL6A5A8TX70 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A5A8TX70 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC15.04■□□□□ -0
COL6A5A8TX70 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.04■□□□□ -0
COL6A5A8TX70 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC15.04■□□□□ -0
COL6A5A8TX70 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL6A5A8TX70 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
COL6A5A8TX70 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.04■□□□□ -0
COL6A5A8TX70 TBC1D3P2-202ENST00000577902 1649 ntBASIC15.04■□□□□ -0
COL6A5A8TX70 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC15.04■□□□□ -0
COL6A5A8TX70 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC15.04■□□□□ -0
COL6A5A8TX70 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A5A8TX70 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL6A5A8TX70 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC15.04■□□□□ -0
COL6A5A8TX70 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A5A8TX70 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL6A5A8TX70 GPX1P2-201ENST00000429271 606 ntBASIC15.04■□□□□ -0
COL6A5A8TX70 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.04■□□□□ -0
COL6A5A8TX70 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC15.04■□□□□ -0
COL6A5A8TX70 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.04■□□□□ -0
COL6A5A8TX70 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.04■□□□□ -0
COL6A5A8TX70 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC15.04■□□□□ -0
COL6A5A8TX70 MIR2861-201ENST00000636310 90 ntBASIC15.04■□□□□ -0
COL6A5A8TX70 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC15.04■□□□□ -0
COL6A5A8TX70 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms