Protein–RNA interactions for Protein: A5YKK6

CNOT1, CCR4-NOT transcription complex subunit 1, humanhuman

Known RBP Predictions only

Length 2,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1A5YKK6 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CNOT1A5YKK6 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CNOT1A5YKK6 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CNOT1A5YKK6 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
CNOT1A5YKK6 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CNOT1A5YKK6 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.52■□□□□ 0.55
CNOT1A5YKK6 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CNOT1A5YKK6 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.52■□□□□ 0.55
CNOT1A5YKK6 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
CNOT1A5YKK6 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.52■□□□□ 0.55
CNOT1A5YKK6 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.52■□□□□ 0.55
CNOT1A5YKK6 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CNOT1A5YKK6 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.51■□□□□ 0.55
CNOT1A5YKK6 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 TSPY22P-201ENST00000427496 604 ntBASIC18.5■□□□□ 0.55
CNOT1A5YKK6 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 LINC00167-201ENST00000530583 1419 ntBASIC18.5■□□□□ 0.55
CNOT1A5YKK6 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 AC036111.1-201ENST00000533973 1582 ntBASIC18.5■□□□□ 0.55
CNOT1A5YKK6 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CNOT1A5YKK6 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 AC093525.10-201ENST00000625130 1569 ntBASIC18.49■□□□□ 0.55
CNOT1A5YKK6 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.49■□□□□ 0.55
CNOT1A5YKK6 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC18.49■□□□□ 0.55
CNOT1A5YKK6 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 GALC-202ENST00000393568 2054 ntTSL 2 BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 TOB2P1-201ENST00000469761 992 ntBASIC18.48■□□□□ 0.55
CNOT1A5YKK6 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 LINC01711-201ENST00000598340 967 ntBASIC18.48■□□□□ 0.55
CNOT1A5YKK6 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.48■□□□□ 0.55
CNOT1A5YKK6 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms