Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL022722.2-201ENST00000402519 180 ntBASIC3.99□□□□□ -1.77
CCDC42Q96M95 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 AC009237.5-201ENST00000414271 501 ntBASIC3.99□□□□□ -1.77
CCDC42Q96M95 RCC2P2-201ENST00000422174 918 ntBASIC3.99□□□□□ -1.77
CCDC42Q96M95 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 RPL7P47-201ENST00000497299 556 ntBASIC3.99□□□□□ -1.77
CCDC42Q96M95 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 AC025423.2-201ENST00000537570 439 ntBASIC3.99□□□□□ -1.77
CCDC42Q96M95 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 AC084757.1-201ENST00000559987 490 ntBASIC3.99□□□□□ -1.77
CCDC42Q96M95 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 AC115621.1-201ENST00000604653 858 ntBASIC3.99□□□□□ -1.77
CCDC42Q96M95 AL713922.2-201ENST00000619384 716 ntBASIC3.99□□□□□ -1.77
CCDC42Q96M95 CDRT1-208ENST00000630868 794 ntBASIC3.99□□□□□ -1.77
CCDC42Q96M95 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 MIR492-201ENST00000638676 116 ntBASIC3.99□□□□□ -1.77
CCDC42Q96M95 AL732372.2-225ENST00000642124 456 ntBASIC3.99□□□□□ -1.77
CCDC42Q96M95 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC42Q96M95 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC42Q96M95 AC100871.1-201ENST00000507871 1456 ntBASIC3.98□□□□□ -1.77
CCDC42Q96M95 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 U1.1-201ENST00000384101 164 ntBASIC3.98□□□□□ -1.77
CCDC42Q96M95 RPS26P8-201ENST00000393490 348 ntBASIC3.98□□□□□ -1.77
CCDC42Q96M95 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 AC096644.3-201ENST00000416788 338 ntBASIC3.98□□□□□ -1.77
CCDC42Q96M95 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 AL390879.2-203ENST00000426943 1121 ntBASIC3.98□□□□□ -1.77
CCDC42Q96M95 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC42Q96M95 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC42Q96M95 SETD6P1-201ENST00000444575 317 ntBASIC3.98□□□□□ -1.77
CCDC42Q96M95 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC42Q96M95 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 AC010680.3-201ENST00000604215 520 ntBASIC3.98□□□□□ -1.77
CCDC42Q96M95 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 RNVU1-4-201ENST00000612985 164 ntBASIC3.98□□□□□ -1.77
CCDC42Q96M95 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC42Q96M95 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC42Q96M95 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC42Q96M95 SAGE2P-201ENST00000420011 2126 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC42Q96M95 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC42Q96M95 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC42Q96M95 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC42Q96M95 USP9YP7-201ENST00000436723 430 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC42Q96M95 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC42Q96M95 USP9YP32-201ENST00000452432 430 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 RPS7P7-201ENST00000463499 571 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 AC010618.1-201ENST00000469924 477 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 SEPT7P6-201ENST00000469999 1143 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC42Q96M95 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC42Q96M95 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC42Q96M95 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC42Q96M95 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC42Q96M95 CR383656.6-201ENST00000550518 394 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 TRAV15-201ENST00000556680 249 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC42Q96M95 AC069366.1-201ENST00000583159 838 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 AC104785.1-201ENST00000603220 588 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC42Q96M95 AC090953.1-201ENST00000604305 1092 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC42Q96M95 AC005962.2-201ENST00000611427 652 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 MLECP1-201ENST00000615893 709 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 AC020978.9-201ENST00000624380 1141 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.97□□□□□ -1.77
CCDC42Q96M95 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC42Q96M95 MTCO1P14-201ENST00000441695 1559 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC42Q96M95 ASNSP1-204ENST00000641977 1664 ntBASIC3.97□□□□□ -1.77
CCDC42Q96M95 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC42Q96M95 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC42Q96M95 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC3.96□□□□□ -1.77
CCDC42Q96M95 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC42Q96M95 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC42Q96M95 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC42Q96M95 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms