Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL590139.1-201ENST00000416267 400 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 E2F6P2-201ENST00000420708 748 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 MTCO1P3-201ENST00000429327 192 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.48□□□□□ -1.53
SMARCA1P28370 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC5.48□□□□□ -1.53
SMARCA1P28370 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.48□□□□□ -1.53
SMARCA1P28370 H2AFZP5-201ENST00000446960 382 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 HMGB1P16-201ENST00000447155 540 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC5.48□□□□□ -1.53
SMARCA1P28370 BX248409.1-201ENST00000455497 255 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC5.48□□□□□ -1.53
SMARCA1P28370 AL133477.1-201ENST00000457472 514 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC5.48□□□□□ -1.53
SMARCA1P28370 RN7SL346P-201ENST00000491561 294 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 AC093755.1-201ENST00000512950 1023 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.48□□□□□ -1.53
SMARCA1P28370 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC5.48□□□□□ -1.53
SMARCA1P28370 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC5.48□□□□□ -1.53
SMARCA1P28370 AC063949.1-201ENST00000552900 865 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC5.48□□□□□ -1.53
SMARCA1P28370 AC090888.1-201ENST00000561335 1141 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 RN7SL652P-201ENST00000577769 300 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.48□□□□□ -1.53
SMARCA1P28370 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.48□□□□□ -1.53
SMARCA1P28370 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.48□□□□□ -1.53
SMARCA1P28370 VIS1.1-201ENST00000610517 203 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 AC100827.5-201ENST00000615883 426 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 AC092608.3-201ENST00000625017 386 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC5.48□□□□□ -1.53
SMARCA1P28370 AF001550.2-201ENST00000636643 217 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SMARCA1P28370 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SMARCA1P28370 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
SMARCA1P28370 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
SMARCA1P28370 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC5.48□□□□□ -1.53
SMARCA1P28370 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SMARCA1P28370 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
SMARCA1P28370 AC090017.1-201ENST00000548612 1779 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.47□□□□□ -1.53
SMARCA1P28370 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SMARCA1P28370 AP001642.1-201ENST00000624727 2117 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.47□□□□□ -1.53
SMARCA1P28370 AC009229.4-201ENST00000623854 1947 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 MFSD8-216ENST00000641147 4009 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
SMARCA1P28370 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
SMARCA1P28370 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SMARCA1P28370 TEX41-202ENST00000414256 604 ntTSL 5 BASIC5.47□□□□□ -1.53
SMARCA1P28370 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.47□□□□□ -1.53
SMARCA1P28370 AC140479.3-201ENST00000418944 1126 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 AC006960.1-201ENST00000419980 153 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC5.47□□□□□ -1.53
SMARCA1P28370 BX119904.4-201ENST00000424402 301 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC5.47□□□□□ -1.53
SMARCA1P28370 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC5.47□□□□□ -1.53
SMARCA1P28370 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.47□□□□□ -1.53
SMARCA1P28370 MTND5P2-201ENST00000442927 1142 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC5.47□□□□□ -1.53
SMARCA1P28370 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.47□□□□□ -1.53
SMARCA1P28370 AC104651.2-201ENST00000447549 528 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SMARCA1P28370 AC010326.1-201ENST00000462726 602 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SMARCA1P28370 GAPDHP39-201ENST00000481866 979 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC5.47□□□□□ -1.53
SMARCA1P28370 HMGB3P16-201ENST00000508037 287 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.47□□□□□ -1.53
SMARCA1P28370 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.47□□□□□ -1.53
SMARCA1P28370 IGKV2-36-201ENST00000519999 223 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC5.47□□□□□ -1.53
SMARCA1P28370 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SMARCA1P28370 DUXAP1-201ENST00000556632 463 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC5.47□□□□□ -1.53
SMARCA1P28370 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.47□□□□□ -1.53
SMARCA1P28370 AC135628.1-201ENST00000568867 534 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.47□□□□□ -1.53
SMARCA1P28370 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC5.47□□□□□ -1.53
SMARCA1P28370 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.47□□□□□ -1.53
SMARCA1P28370 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
SMARCA1P28370 AC139792.2-201ENST00000624218 587 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SMARCA1P28370 OR8B1P-202ENST00000641132 1178 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
SMARCA1P28370 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.47□□□□□ -1.53
SMARCA1P28370 MAPK10-349ENST00000641767 3661 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SMARCA1P28370 AL031119.1-201ENST00000404707 1879 ntBASIC5.47□□□□□ -1.53
SMARCA1P28370 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SMARCA1P28370 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.47□□□□□ -1.53
SMARCA1P28370 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SMARCA1P28370 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.46□□□□□ -1.53
SMARCA1P28370 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.46□□□□□ -1.53
SMARCA1P28370 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.46□□□□□ -1.54
SMARCA1P28370 Z98755.1-201ENST00000407015 1384 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SMARCA1P28370 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.46□□□□□ -1.54
SMARCA1P28370 RNU6-560P-201ENST00000364007 108 ntBASIC5.46□□□□□ -1.54
SMARCA1P28370 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SMARCA1P28370 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
SMARCA1P28370 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms