Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RN7SL270P-201ENST00000579643 281 ntBASIC6.22□□□□□ -1.41
MSX1P28360 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.22□□□□□ -1.41
MSX1P28360 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC6.22□□□□□ -1.41
MSX1P28360 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC6.22□□□□□ -1.41
MSX1P28360 AL035410.2-201ENST00000604963 864 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AL121992.2-201ENST00000606262 256 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AC100812.1-201ENST00000607622 580 ntBASIC6.22□□□□□ -1.41
MSX1P28360 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.22□□□□□ -1.41
MSX1P28360 uc_338.9-201ENST00000617424 182 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AC098657.3-201ENST00000620434 263 ntBASIC6.22□□□□□ -1.41
MSX1P28360 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC6.22□□□□□ -1.41
MSX1P28360 AC120057.5-201ENST00000623840 154 ntBASIC6.22□□□□□ -1.41
MSX1P28360 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX1P28360 WBP11P1-201ENST00000562560 1931 ntBASIC6.22□□□□□ -1.41
MSX1P28360 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX1P28360 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX1P28360 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
MSX1P28360 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC6.22□□□□□ -1.41
MSX1P28360 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX1P28360 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX1P28360 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
MSX1P28360 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
MSX1P28360 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.21□□□□□ -1.41
MSX1P28360 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
MSX1P28360 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC6.21□□□□□ -1.41
MSX1P28360 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC6.21□□□□□ -1.41
MSX1P28360 MTCO1P7-201ENST00000419523 1542 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
MSX1P28360 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
MSX1P28360 Y_RNA.22-201ENST00000362492 102 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX1P28360 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
MSX1P28360 RNU6-26P-201ENST00000383985 107 ntBASIC6.21□□□□□ -1.42
MSX1P28360 RNU6-209P-201ENST00000384118 107 ntBASIC6.21□□□□□ -1.42
MSX1P28360 RNU6-39P-201ENST00000384344 107 ntBASIC6.21□□□□□ -1.42
MSX1P28360 RNU6-310P-201ENST00000384655 107 ntBASIC6.21□□□□□ -1.42
MSX1P28360 RNA5SP474-201ENST00000391234 90 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AL360271.1-201ENST00000395679 510 ntBASIC6.21□□□□□ -1.42
MSX1P28360 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
MSX1P28360 AL078604.1-201ENST00000404609 466 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX1P28360 RPL36AP36-201ENST00000418616 301 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AHCYP8-201ENST00000425108 209 ntBASIC6.21□□□□□ -1.42
MSX1P28360 TRBV29OR9-2-201ENST00000427589 333 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AC093151.1-201ENST00000427711 313 ntBASIC6.21□□□□□ -1.42
MSX1P28360 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
MSX1P28360 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX1P28360 AC007383.1-201ENST00000445875 636 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AL161722.1-201ENST00000446972 1032 ntBASIC6.21□□□□□ -1.42
MSX1P28360 MGAT2P1-201ENST00000449718 797 ntBASIC6.21□□□□□ -1.42
MSX1P28360 NANOGP10-201ENST00000453325 895 ntBASIC6.21□□□□□ -1.42
MSX1P28360 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX1P28360 RNU7-180P-201ENST00000459240 63 ntBASIC6.21□□□□□ -1.42
MSX1P28360 RPL35AP28-201ENST00000459730 331 ntBASIC6.21□□□□□ -1.42
MSX1P28360 UOX-201ENST00000471089 899 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC6.21□□□□□ -1.42
MSX1P28360 H3F3AP3-201ENST00000497682 407 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AC110794.1-201ENST00000505816 425 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AC092436.1-201ENST00000506450 503 ntBASIC6.21□□□□□ -1.42
MSX1P28360 TXNP6-201ENST00000510190 310 ntBASIC6.21□□□□□ -1.42
MSX1P28360 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX1P28360 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC6.21□□□□□ -1.42
MSX1P28360 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
MSX1P28360 TRIM51DP-201ENST00000529746 596 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AC023442.1-201ENST00000531247 422 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX1P28360 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC6.21□□□□□ -1.42
MSX1P28360 AC018552.3-201ENST00000567416 561 ntBASIC6.21□□□□□ -1.42
MSX1P28360 VN1R84P-201ENST00000593697 235 ntBASIC6.21□□□□□ -1.42
MSX1P28360 RPL7AP69-201ENST00000595306 806 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AL670379.11-201ENST00000604059 253 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AL670379.10-201ENST00000604330 253 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AL670379.12-201ENST00000605291 253 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AL670379.9-201ENST00000605428 253 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AL390877.1-201ENST00000605704 214 ntBASIC6.21□□□□□ -1.42
MSX1P28360 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC6.21□□□□□ -1.42
MSX1P28360 OR6R2P-201ENST00000609216 300 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
MSX1P28360 AC012409.4-201ENST00000612923 249 ntBASIC6.21□□□□□ -1.42
MSX1P28360 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC6.21□□□□□ -1.42
MSX1P28360 uc_338.12-201ENST00000616344 181 ntBASIC6.21□□□□□ -1.42
MSX1P28360 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC6.21□□□□□ -1.42
MSX1P28360 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
MSX1P28360 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
MSX1P28360 AC104118.1-201ENST00000607625 1589 ntBASIC6.21□□□□□ -1.42
MSX1P28360 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
MSX1P28360 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
MSX1P28360 AC109780.1-201ENST00000451768 1344 ntBASIC6.21□□□□□ -1.42
MSX1P28360 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC6.21□□□□□ -1.42
MSX1P28360 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
MSX1P28360 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.42
MSX1P28360 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
MSX1P28360 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 AC007993.1-201ENST00000621298 2430 ntBASIC6.2□□□□□ -1.42
MSX1P28360 CA10-204ENST00000570565 2276 ntTSL 5 BASIC6.2□□□□□ -1.42
MSX1P28360 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.2□□□□□ -1.42
MSX1P28360 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
MSX1P28360 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX1P28360 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
MSX1P28360 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms