Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.47□□□□□ -1.69
COL5A3P25940 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL5A3P25940 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.47□□□□□ -1.69
COL5A3P25940 U3.44-201ENST00000458938 192 ntBASIC4.47□□□□□ -1.69
COL5A3P25940 AC109458.1-201ENST00000508858 316 ntBASIC4.47□□□□□ -1.69
COL5A3P25940 RNU6-579P-201ENST00000516879 102 ntBASIC4.47□□□□□ -1.69
COL5A3P25940 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL5A3P25940 KLKP1-201ENST00000595979 403 ntBASIC4.47□□□□□ -1.69
COL5A3P25940 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL5A3P25940 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL5A3P25940 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.47□□□□□ -1.69
COL5A3P25940 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
COL5A3P25940 OR10J6P-201ENST00000289731 930 ntBASIC4.46□□□□□ -1.69
COL5A3P25940 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.46□□□□□ -1.69
COL5A3P25940 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.46□□□□□ -1.69
COL5A3P25940 AP001486.1-201ENST00000463339 476 ntBASIC4.46□□□□□ -1.69
COL5A3P25940 AC093524.1-201ENST00000564266 1094 ntBASIC4.46□□□□□ -1.69
COL5A3P25940 AC027281.1-201ENST00000574178 758 ntBASIC4.46□□□□□ -1.69
COL5A3P25940 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.46□□□□□ -1.69
COL5A3P25940 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.46□□□□□ -1.69
COL5A3P25940 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL5A3P25940 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL5A3P25940 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.69
COL5A3P25940 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL5A3P25940 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.46□□□□□ -1.7
COL5A3P25940 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
COL5A3P25940 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL5A3P25940 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL5A3P25940 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.46□□□□□ -1.7
COL5A3P25940 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL5A3P25940 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.46□□□□□ -1.7
COL5A3P25940 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.46□□□□□ -1.7
COL5A3P25940 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.46□□□□□ -1.7
COL5A3P25940 HSPE1P16-201ENST00000426640 348 ntBASIC4.46□□□□□ -1.7
COL5A3P25940 AC236972.1-201ENST00000433225 199 ntBASIC4.46□□□□□ -1.7
COL5A3P25940 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.46□□□□□ -1.7
COL5A3P25940 NPM1P48-201ENST00000436002 853 ntBASIC4.46□□□□□ -1.7
COL5A3P25940 RN7SKP209-201ENST00000516888 304 ntBASIC4.46□□□□□ -1.7
COL5A3P25940 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.46□□□□□ -1.7
COL5A3P25940 AC024224.1-201ENST00000538284 609 ntBASIC4.46□□□□□ -1.7
COL5A3P25940 UBE2NP1-201ENST00000545592 458 ntBASIC4.46□□□□□ -1.7
COL5A3P25940 AC011611.1-201ENST00000552179 197 ntBASIC4.46□□□□□ -1.7
COL5A3P25940 NCAPGP2-201ENST00000557911 754 ntBASIC4.46□□□□□ -1.7
COL5A3P25940 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.46□□□□□ -1.7
COL5A3P25940 AL732618.1-201ENST00000623251 301 ntBASIC4.46□□□□□ -1.7
COL5A3P25940 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC4.46□□□□□ -1.7
COL5A3P25940 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
COL5A3P25940 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL5A3P25940 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
COL5A3P25940 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL5A3P25940 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A3P25940 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
COL5A3P25940 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.45□□□□□ -1.7
COL5A3P25940 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.45□□□□□ -1.7
COL5A3P25940 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A3P25940 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A3P25940 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.45□□□□□ -1.7
COL5A3P25940 MOB1AP1-201ENST00000430903 535 ntBASIC4.45□□□□□ -1.7
COL5A3P25940 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.45□□□□□ -1.7
COL5A3P25940 NANOGNBP1-201ENST00000448444 480 ntBASIC4.45□□□□□ -1.7
COL5A3P25940 AC073522.1-201ENST00000483312 377 ntBASIC4.45□□□□□ -1.7
COL5A3P25940 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.45□□□□□ -1.7
COL5A3P25940 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.45□□□□□ -1.7
COL5A3P25940 AL353600.1-201ENST00000608148 251 ntBASIC4.45□□□□□ -1.7
COL5A3P25940 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC4.45□□□□□ -1.7
COL5A3P25940 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.45□□□□□ -1.7
COL5A3P25940 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.45□□□□□ -1.7
COL5A3P25940 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A3P25940 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A3P25940 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.45□□□□□ -1.7
COL5A3P25940 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
COL5A3P25940 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.45□□□□□ -1.7
COL5A3P25940 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.44□□□□□ -1.7
COL5A3P25940 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A3P25940 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A3P25940 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.44□□□□□ -1.7
COL5A3P25940 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A3P25940 RNA5SP42-201ENST00000364278 115 ntBASIC4.44□□□□□ -1.7
COL5A3P25940 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.44□□□□□ -1.7
COL5A3P25940 AC099563.1-201ENST00000456086 418 ntBASIC4.44□□□□□ -1.7
COL5A3P25940 AC008481.1-201ENST00000463278 396 ntBASIC4.44□□□□□ -1.7
COL5A3P25940 AC080014.1-201ENST00000496877 1201 ntBASIC4.44□□□□□ -1.7
COL5A3P25940 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.44□□□□□ -1.7
COL5A3P25940 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.44□□□□□ -1.7
COL5A3P25940 FCF1P8-201ENST00000510322 597 ntBASIC4.44□□□□□ -1.7
COL5A3P25940 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.44□□□□□ -1.7
COL5A3P25940 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.44□□□□□ -1.7
COL5A3P25940 AL163642.2-201ENST00000604722 1019 ntBASIC4.44□□□□□ -1.7
COL5A3P25940 MIR7851-201ENST00000610611 160 ntBASIC4.44□□□□□ -1.7
COL5A3P25940 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.44□□□□□ -1.7
COL5A3P25940 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL5A3P25940 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
COL5A3P25940 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
COL5A3P25940 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A3P25940 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A3P25940 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
COL5A3P25940 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.44□□□□□ -1.7
COL5A3P25940 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A3P25940 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A3P25940 U3.26-201ENST00000391236 204 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms