Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC7.2□□□□□ -1.26
COL9A1P20849 AC133485.2-201ENST00000566232 2484 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 STON2-209ENST00000614646 2964 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
COL9A1P20849 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
COL9A1P20849 AC074029.4-201ENST00000624796 1859 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC7.19□□□□□ -1.26
COL9A1P20849 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 FBXL4-202ENST00000369244 8035 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 OR2A20P-201ENST00000479887 2913 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC7.19□□□□□ -1.26
COL9A1P20849 COX6B1P3-201ENST00000312310 260 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 RNA5SP485-201ENST00000365053 119 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 SNORA24.1-201ENST00000384401 135 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 MIR188-201ENST00000385034 86 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 RNU6-1055P-201ENST00000391085 107 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 RN7SKP126-201ENST00000411143 300 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 Y_RNA.793-201ENST00000411222 111 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 AC068481.1-201ENST00000415520 530 ntTSL 4 BASIC7.19□□□□□ -1.26
COL9A1P20849 AC108032.1-201ENST00000416706 207 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC7.19□□□□□ -1.26
COL9A1P20849 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC7.19□□□□□ -1.26
COL9A1P20849 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC7.19□□□□□ -1.26
COL9A1P20849 EIF1P2-201ENST00000428233 350 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 AL590233.1-201ENST00000430017 456 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC7.19□□□□□ -1.26
COL9A1P20849 AL353662.1-201ENST00000439099 327 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 SDHCP3-201ENST00000445371 506 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC7.19□□□□□ -1.26
COL9A1P20849 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC7.19□□□□□ -1.26
COL9A1P20849 AC105758.1-201ENST00000506038 399 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 ATP5LP3-201ENST00000514223 304 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 AC097486.1-201ENST00000515331 210 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 CYCSP28-201ENST00000534284 321 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
COL9A1P20849 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC7.19□□□□□ -1.26
COL9A1P20849 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC7.19□□□□□ -1.26
COL9A1P20849 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 RSPH4A-201ENST00000229554 2825 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC7.19□□□□□ -1.26
COL9A1P20849 AC107021.2-201ENST00000567714 2095 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 SRFBP1-201ENST00000339397 2855 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 PTK2-240ENST00000522684 4955 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
COL9A1P20849 CYP8B1-201ENST00000316161 3974 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
COL9A1P20849 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC7.19□□□□□ -1.26
COL9A1P20849 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
COL9A1P20849 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC7.19□□□□□ -1.26
COL9A1P20849 CACNB4-269ENST00000638005 4615 ntTSL 2 BASIC7.19□□□□□ -1.26
COL9A1P20849 ATP1A4-201ENST00000368081 3839 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 HELB-201ENST00000247815 12866 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 AC009313.2-201ENST00000417893 1941 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 AL121768.1-201ENST00000613917 2544 ntBASIC7.19□□□□□ -1.26
COL9A1P20849 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL9A1P20849 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL9A1P20849 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
COL9A1P20849 ESRP1-201ENST00000358397 3756 ntAPPRIS ALT1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL9A1P20849 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL9A1P20849 AKAP5-201ENST00000320636 2601 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
COL9A1P20849 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC7.18□□□□□ -1.26
COL9A1P20849 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL9A1P20849 KIF6-208ENST00000538893 2386 ntTSL 5 BASIC7.18□□□□□ -1.26
COL9A1P20849 CLDN12-201ENST00000287916 3565 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL9A1P20849 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC7.18□□□□□ -1.26
COL9A1P20849 TROVE2-205ENST00000367446 3081 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL9A1P20849 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL9A1P20849 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC7.18□□□□□ -1.26
COL9A1P20849 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC7.18□□□□□ -1.26
COL9A1P20849 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL9A1P20849 MIR335-201ENST00000362173 94 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 RNU1-19P-201ENST00000363306 165 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 RNA5SP77-201ENST00000365394 120 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 Y_RNA.399-201ENST00000383955 105 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 RNU6-441P-201ENST00000384545 106 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 Y_RNA.577-201ENST00000384794 101 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 MIR613-201ENST00000385248 95 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 RPL34P19-201ENST00000415903 342 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 AL022100.1-202ENST00000421214 548 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC7.18□□□□□ -1.26
COL9A1P20849 AL133396.1-201ENST00000432048 687 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC7.18□□□□□ -1.26
COL9A1P20849 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC7.18□□□□□ -1.26
COL9A1P20849 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC7.18□□□□□ -1.26
COL9A1P20849 HMGB1P4-201ENST00000455362 567 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 AC009963.3-201ENST00000458090 486 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 SNORA81.1-201ENST00000458922 177 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 AC068228.1-201ENST00000461723 211 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 AC096745.1-201ENST00000509945 370 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 CDH12P4-201ENST00000517835 295 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 CDH12P3-201ENST00000517935 295 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC7.18□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms