Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
SHMT2P34897 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SHMT2P34897 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
SHMT2P34897 AC008725.1-201ENST00000605123 2263 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHMT2P34897 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SHMT2P34897 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHMT2P34897 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
SHMT2P34897 BX005019.1-201ENST00000561881 1810 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 FAM35DP-201ENST00000323387 2712 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.98□□□□□ -1.77
SHMT2P34897 RNU6-532P-201ENST00000384318 107 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.98□□□□□ -1.77
SHMT2P34897 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.98□□□□□ -1.77
SHMT2P34897 ELOCP3-201ENST00000439303 348 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.98□□□□□ -1.77
SHMT2P34897 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC3.98□□□□□ -1.77
SHMT2P34897 IFNWP4-201ENST00000453148 294 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.98□□□□□ -1.77
SHMT2P34897 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.98□□□□□ -1.77
SHMT2P34897 HMGB1P3-201ENST00000502802 616 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 AC093824.1-201ENST00000508796 343 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 RNU6-889P-201ENST00000517189 103 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC3.98□□□□□ -1.77
SHMT2P34897 AC007224.1-201ENST00000564410 144 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 MIR5684-201ENST00000585074 65 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 AC020914.4-201ENST00000597690 277 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 ZYXP1-201ENST00000617638 118 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 AC067852.7-201ENST00000623270 535 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHMT2P34897 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.98□□□□□ -1.77
SHMT2P34897 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHMT2P34897 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHMT2P34897 AC027287.1-201ENST00000553115 1453 ntBASIC3.98□□□□□ -1.77
SHMT2P34897 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.97□□□□□ -1.77
SHMT2P34897 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SHMT2P34897 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SHMT2P34897 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
SHMT2P34897 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.97□□□□□ -1.77
SHMT2P34897 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SHMT2P34897 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
SHMT2P34897 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SHMT2P34897 AC017002.4-201ENST00000604721 1525 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
SHMT2P34897 SPRR2C-201ENST00000290702 219 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 AC011155.1-201ENST00000316512 456 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 RNA5SP322-201ENST00000363617 119 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 RNA5SP130-201ENST00000364431 114 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.97□□□□□ -1.77
SHMT2P34897 RNU6-40P-201ENST00000384254 107 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 RNU1-13P-201ENST00000384499 162 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 SNORA37-201ENST00000384504 129 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 SNORA3C-201ENST00000408792 125 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 HSPE1P12-201ENST00000412576 301 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 TPT1P2-201ENST00000413105 503 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 RANP4-201ENST00000413361 655 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 AL356095.1-201ENST00000417217 199 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 AC099336.2-201ENST00000422457 254 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 AL391219.1-201ENST00000422570 483 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC3.97□□□□□ -1.77
SHMT2P34897 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SHMT2P34897 AF228730.2-201ENST00000438784 848 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 TPTE2P3-201ENST00000441562 1189 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 HSFY6P-201ENST00000445573 403 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.97□□□□□ -1.77
SHMT2P34897 NUTF2P7-201ENST00000453086 375 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 TPRKBP1-201ENST00000456243 481 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 AC099560.2-201ENST00000457554 255 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.97□□□□□ -1.77
SHMT2P34897 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC3.97□□□□□ -1.77
SHMT2P34897 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.97□□□□□ -1.77
SHMT2P34897 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.97□□□□□ -1.77
SHMT2P34897 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
SHMT2P34897 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.97□□□□□ -1.77
SHMT2P34897 AC023158.1-201ENST00000561632 1025 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.97□□□□□ -1.77
SHMT2P34897 RPL23AP87-202ENST00000573039 466 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.97□□□□□ -1.77
SHMT2P34897 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SHMT2P34897 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.97□□□□□ -1.77
SHMT2P34897 AL645927.2-201ENST00000618350 349 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 AC095038.2-201ENST00000621464 1070 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 AC119674.1-212ENST00000641155 993 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
SHMT2P34897 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.97□□□□□ -1.77
SHMT2P34897 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
SHMT2P34897 AC134882.1-201ENST00000603738 1676 ntBASIC3.97□□□□□ -1.77
SHMT2P34897 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.96□□□□□ -1.77
SHMT2P34897 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.77
SHMT2P34897 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.96□□□□□ -1.78
SHMT2P34897 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
SHMT2P34897 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
SHMT2P34897 RNU1-89P-201ENST00000384592 164 ntBASIC3.96□□□□□ -1.78
SHMT2P34897 MIR320B1-201ENST00000390209 79 ntBASIC3.96□□□□□ -1.78
SHMT2P34897 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SHMT2P34897 CCNB2P1-201ENST00000399411 1150 ntBASIC3.96□□□□□ -1.78
SHMT2P34897 MTND3P20-201ENST00000407663 186 ntBASIC3.96□□□□□ -1.78
SHMT2P34897 OR8G2P-201ENST00000412796 908 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms