Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 DUXAP10-204ENST00000612052 616 ntBASIC4.43□□□□□ -1.7
SIX2Q9NPC8 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 AC109809.1-201ENST00000619665 545 ntBASIC4.43□□□□□ -1.7
SIX2Q9NPC8 MIR3653-201ENST00000625572 110 ntBASIC4.43□□□□□ -1.7
SIX2Q9NPC8 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 AL773545.4-201ENST00000637262 310 ntBASIC4.43□□□□□ -1.7
SIX2Q9NPC8 AC006927.2-201ENST00000639256 389 ntBASIC4.43□□□□□ -1.7
SIX2Q9NPC8 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 AL513478.4-201ENST00000641636 310 ntBASIC4.43□□□□□ -1.7
SIX2Q9NPC8 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SIX2Q9NPC8 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 LARP1BP1-201ENST00000506036 1359 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 RNU5B-4P-201ENST00000363508 111 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 SNORD56.4-201ENST00000363883 71 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 SNORA79B-201ENST00000410557 148 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 RNA5SP104-201ENST00000410989 118 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 AL590806.1-201ENST00000415818 853 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 AC008173.1-201ENST00000418901 264 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 GTF2IP2-201ENST00000424290 697 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 AC115285.1-201ENST00000424879 736 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 RPL23AP46-201ENST00000438548 490 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 AC108120.2-201ENST00000512973 294 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 HNRNPKP5-201ENST00000515300 253 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 RN7SL600P-201ENST00000581811 299 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 AL606834.3-201ENST00000602615 496 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 RMST_10.1-201ENST00000616309 154 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 AC090246.1-201ENST00000616499 426 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 AC097520.1-201ENST00000624435 385 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 AL590396.4-201ENST00000636779 956 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 LINC01355-201ENST00000566551 5444 ntBASIC4.42□□□□□ -1.7
SIX2Q9NPC8 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
SIX2Q9NPC8 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 A2MP1-204ENST00000566278 4130 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 FAM3C2-201ENST00000312214 681 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 RNA5SP513-201ENST00000364648 118 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 RNU6-1263P-201ENST00000384601 106 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AP002784.2-201ENST00000397300 549 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 ATF1P1-201ENST00000406040 927 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 GAPDHP49-201ENST00000421421 961 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 CHIAP3-201ENST00000423668 1133 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 FABP5P3-201ENST00000437960 408 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 MED6P1-201ENST00000439659 713 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 HMGB3P22-202ENST00000451823 572 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 RPS26P15-201ENST00000488067 348 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 RNU6-1308P-201ENST00000516817 103 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC022968.1-201ENST00000567372 442 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC012417.1-201ENST00000582307 1039 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 MIR5684-201ENST00000585074 65 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 BNIP3P38-201ENST00000601117 544 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms