Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC087650.1-201ENST00000431445 468 ntBASIC4.78□□□□□ -1.64
COL18A1P39060 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.78□□□□□ -1.64
COL18A1P39060 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.78□□□□□ -1.64
COL18A1P39060 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.78□□□□□ -1.64
COL18A1P39060 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
COL18A1P39060 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL18A1P39060 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.78□□□□□ -1.64
COL18A1P39060 CR392039.4-201ENST00000624968 501 ntBASIC4.78□□□□□ -1.64
COL18A1P39060 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.78□□□□□ -1.64
COL18A1P39060 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.78□□□□□ -1.64
COL18A1P39060 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL18A1P39060 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL18A1P39060 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
COL18A1P39060 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
COL18A1P39060 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.77□□□□□ -1.65
COL18A1P39060 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
COL18A1P39060 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL18A1P39060 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL18A1P39060 AC007685.1-201ENST00000329806 452 ntBASIC4.77□□□□□ -1.65
COL18A1P39060 BMS1P3-201ENST00000372011 932 ntBASIC4.77□□□□□ -1.65
COL18A1P39060 RNA5SP146-201ENST00000410743 123 ntBASIC4.77□□□□□ -1.65
COL18A1P39060 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.77□□□□□ -1.65
COL18A1P39060 TPTE2P3-201ENST00000441562 1189 ntBASIC4.77□□□□□ -1.65
COL18A1P39060 RPL37P3-201ENST00000456825 293 ntBASIC4.77□□□□□ -1.65
COL18A1P39060 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.77□□□□□ -1.65
COL18A1P39060 RN7SL807P-201ENST00000470923 297 ntBASIC4.77□□□□□ -1.65
COL18A1P39060 HIGD1AP18-201ENST00000520730 278 ntBASIC4.77□□□□□ -1.65
COL18A1P39060 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.77□□□□□ -1.65
COL18A1P39060 AL033523.1-201ENST00000605153 153 ntBASIC4.77□□□□□ -1.65
COL18A1P39060 SCARNA15.3-201ENST00000626315 122 ntBASIC4.77□□□□□ -1.65
COL18A1P39060 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.77□□□□□ -1.65
COL18A1P39060 SCARNA4.1-201ENST00000628597 123 ntBASIC4.77□□□□□ -1.65
COL18A1P39060 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL18A1P39060 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.77□□□□□ -1.65
COL18A1P39060 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL18A1P39060 DDX18P4-201ENST00000511690 1966 ntBASIC4.77□□□□□ -1.65
COL18A1P39060 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL18A1P39060 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL18A1P39060 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL18A1P39060 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL18A1P39060 RNA5SP374-201ENST00000362939 125 ntBASIC4.76□□□□□ -1.65
COL18A1P39060 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
COL18A1P39060 SNORA48.5-201ENST00000391143 135 ntBASIC4.76□□□□□ -1.65
COL18A1P39060 AL034403.1-201ENST00000399414 885 ntBASIC4.76□□□□□ -1.65
COL18A1P39060 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.76□□□□□ -1.65
COL18A1P39060 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.76□□□□□ -1.65
COL18A1P39060 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL18A1P39060 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.76□□□□□ -1.65
COL18A1P39060 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.76□□□□□ -1.65
COL18A1P39060 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.76□□□□□ -1.65
COL18A1P39060 MIR5004-201ENST00000579078 107 ntBASIC4.76□□□□□ -1.65
COL18A1P39060 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.76□□□□□ -1.65
COL18A1P39060 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
COL18A1P39060 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
COL18A1P39060 AC112198.2-201ENST00000426589 6996 ntBASIC4.76□□□□□ -1.65
COL18A1P39060 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
COL18A1P39060 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
COL18A1P39060 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL18A1P39060 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL18A1P39060 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL18A1P39060 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC4.76□□□□□ -1.65
COL18A1P39060 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.76□□□□□ -1.65
COL18A1P39060 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.76□□□□□ -1.65
COL18A1P39060 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
COL18A1P39060 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.76□□□□□ -1.65
COL18A1P39060 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.76□□□□□ -1.65
COL18A1P39060 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.76□□□□□ -1.65
COL18A1P39060 AC069285.2-201ENST00000440210 275 ntBASIC4.76□□□□□ -1.65
COL18A1P39060 RSL24D1P3-201ENST00000449255 495 ntBASIC4.76□□□□□ -1.65
COL18A1P39060 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.76□□□□□ -1.65
COL18A1P39060 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.76□□□□□ -1.65
COL18A1P39060 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.76□□□□□ -1.65
COL18A1P39060 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.76□□□□□ -1.65
COL18A1P39060 AC135507.2-201ENST00000612443 309 ntBASIC4.76□□□□□ -1.65
COL18A1P39060 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.76□□□□□ -1.65
COL18A1P39060 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL18A1P39060 MFSD8-233ENST00000641482 4860 ntBASIC4.75□□□□□ -1.65
COL18A1P39060 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.75□□□□□ -1.65
COL18A1P39060 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
COL18A1P39060 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL18A1P39060 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.75□□□□□ -1.65
COL18A1P39060 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL18A1P39060 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
COL18A1P39060 RN7SKP111-201ENST00000410349 271 ntBASIC4.75□□□□□ -1.65
COL18A1P39060 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.75□□□□□ -1.65
COL18A1P39060 AC008481.1-201ENST00000463278 396 ntBASIC4.75□□□□□ -1.65
COL18A1P39060 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL18A1P39060 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.75□□□□□ -1.65
COL18A1P39060 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.75□□□□□ -1.65
COL18A1P39060 SUMO2P20-201ENST00000520803 283 ntBASIC4.75□□□□□ -1.65
COL18A1P39060 AC012603.1-201ENST00000606424 528 ntBASIC4.75□□□□□ -1.65
COL18A1P39060 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.75□□□□□ -1.65
COL18A1P39060 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
COL18A1P39060 AC097504.1-201ENST00000515103 2415 ntBASIC4.75□□□□□ -1.65
COL18A1P39060 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC4.75□□□□□ -1.65
COL18A1P39060 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
COL18A1P39060 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL18A1P39060 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL18A1P39060 AC090337.1-201ENST00000579651 2074 ntBASIC4.74□□□□□ -1.65
COL18A1P39060 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms