Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
BRCA1P38398 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
BRCA1P38398 AL353743.1-202ENST00000431724 1695 ntBASIC4.57□□□□□ -1.68
BRCA1P38398 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.57□□□□□ -1.68
BRCA1P38398 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.56□□□□□ -1.68
BRCA1P38398 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC4.56□□□□□ -1.68
BRCA1P38398 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.56□□□□□ -1.68
BRCA1P38398 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 RNA5SP374-201ENST00000362939 125 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 RPL12P46-201ENST00000436610 195 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 AC091862.1-201ENST00000438016 1100 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC4.56□□□□□ -1.68
BRCA1P38398 RPL5P23-201ENST00000496040 868 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 AC069306.1-201ENST00000507006 843 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
BRCA1P38398 WDR61-205ENST00000558459 884 ntTSL 3 BASIC4.56□□□□□ -1.68
BRCA1P38398 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
BRCA1P38398 MIR7112-201ENST00000616126 65 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.56□□□□□ -1.68
BRCA1P38398 AL365440.1-201ENST00000436135 2167 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
BRCA1P38398 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
BRCA1P38398 SAMMSON-213ENST00000641336 1521 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 MAPK10-320ENST00000641462 6696 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 MTND4LP20-201ENST00000402379 270 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.56□□□□□ -1.68
BRCA1P38398 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
BRCA1P38398 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
BRCA1P38398 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.56□□□□□ -1.68
BRCA1P38398 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.56□□□□□ -1.68
BRCA1P38398 AL035458.1-201ENST00000433096 585 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
BRCA1P38398 SETD6P1-201ENST00000444575 317 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 AC012123.2-201ENST00000485809 248 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 AGGF1P3-201ENST00000493675 1213 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.56□□□□□ -1.68
BRCA1P38398 MIR5004-201ENST00000579078 107 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.56□□□□□ -1.68
BRCA1P38398 AC096586.2-201ENST00000610260 441 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 AC095038.2-201ENST00000621464 1070 ntBASIC4.56□□□□□ -1.68
BRCA1P38398 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BRCA1P38398 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.55□□□□□ -1.68
BRCA1P38398 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
BRCA1P38398 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC4.55□□□□□ -1.68
BRCA1P38398 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.55□□□□□ -1.68
BRCA1P38398 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
BRCA1P38398 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
BRCA1P38398 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
BRCA1P38398 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
BRCA1P38398 SNORA3C-201ENST00000408792 125 ntBASIC4.55□□□□□ -1.68
BRCA1P38398 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.55□□□□□ -1.68
BRCA1P38398 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.55□□□□□ -1.68
BRCA1P38398 AC245054.1-201ENST00000420944 258 ntBASIC4.55□□□□□ -1.68
BRCA1P38398 AL831737.1-201ENST00000441288 271 ntBASIC4.55□□□□□ -1.68
BRCA1P38398 AL031584.1-201ENST00000447169 754 ntBASIC4.55□□□□□ -1.68
BRCA1P38398 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.55□□□□□ -1.68
BRCA1P38398 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
BRCA1P38398 AC084198.1-201ENST00000477747 402 ntBASIC4.55□□□□□ -1.68
BRCA1P38398 AC025518.1-201ENST00000479856 347 ntBASIC4.55□□□□□ -1.68
BRCA1P38398 RPL32P34-201ENST00000486380 400 ntBASIC4.55□□□□□ -1.68
BRCA1P38398 AC006445.1-201ENST00000491925 405 ntBASIC4.55□□□□□ -1.68
BRCA1P38398 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.55□□□□□ -1.68
BRCA1P38398 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.55□□□□□ -1.68
BRCA1P38398 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.55□□□□□ -1.68
BRCA1P38398 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.55□□□□□ -1.68
BRCA1P38398 AP000553.6-201ENST00000641242 118 ntBASIC4.55□□□□□ -1.68
BRCA1P38398 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.55□□□□□ -1.68
BRCA1P38398 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
BRCA1P38398 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
BRCA1P38398 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
BRCA1P38398 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC4.54□□□□□ -1.68
BRCA1P38398 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.54□□□□□ -1.68
BRCA1P38398 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
BRCA1P38398 SNORD17-201ENST00000390930 237 ntBASIC4.54□□□□□ -1.68
BRCA1P38398 RPL7AP73-201ENST00000413490 353 ntBASIC4.54□□□□□ -1.68
BRCA1P38398 KCTD9P6-201ENST00000522306 950 ntBASIC4.54□□□□□ -1.68
BRCA1P38398 AC068790.5-201ENST00000602741 355 ntBASIC4.54□□□□□ -1.68
BRCA1P38398 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.54□□□□□ -1.68
BRCA1P38398 ATE1-AS1-202ENST00000636460 506 ntBASIC4.54□□□□□ -1.68
BRCA1P38398 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
BRCA1P38398 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.54□□□□□ -1.68
BRCA1P38398 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
BRCA1P38398 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC4.54□□□□□ -1.68
BRCA1P38398 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
BRCA1P38398 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.54□□□□□ -1.68
BRCA1P38398 USP9YP36-201ENST00000424581 829 ntBASIC4.54□□□□□ -1.68
BRCA1P38398 USP9YP31-201ENST00000431405 881 ntBASIC4.54□□□□□ -1.68
BRCA1P38398 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC4.54□□□□□ -1.68
BRCA1P38398 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.54□□□□□ -1.68
BRCA1P38398 Vault.1-201ENST00000516474 102 ntBASIC4.54□□□□□ -1.68
BRCA1P38398 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.54□□□□□ -1.68
BRCA1P38398 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.54□□□□□ -1.68
BRCA1P38398 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.54□□□□□ -1.68
BRCA1P38398 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.54□□□□□ -1.68
BRCA1P38398 AL713998.2-201ENST00000604538 1198 ntBASIC4.54□□□□□ -1.68
BRCA1P38398 SNORA62.6-201ENST00000606322 83 ntBASIC4.54□□□□□ -1.68
BRCA1P38398 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.54□□□□□ -1.68
BRCA1P38398 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.53□□□□□ -1.68
BRCA1P38398 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
BRCA1P38398 MAPK10-253ENST00000641010 4072 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms