Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP88Q99567 TCP11X3P-202ENST00000514289 1254 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 RNU5A-4P-201ENST00000516588 111 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP88Q99567 OR5M2P-201ENST00000529003 936 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP88Q99567 AC010198.2-201ENST00000550612 259 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AP003973.1-201ENST00000604639 691 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AC018695.5-201ENST00000605872 315 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AP000255.1-201ENST00000610276 676 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 Z95327.3-201ENST00000610385 572 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 FAM27B-201ENST00000610601 213 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AC022079.1-201ENST00000621546 602 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP88Q99567 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP88Q99567 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
NUP88Q99567 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.66□□□□□ -1.5
NUP88Q99567 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
NUP88Q99567 AC104454.1-201ENST00000421341 1401 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 AC000374.1-201ENST00000434698 1745 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
NUP88Q99567 AC008758.3-201ENST00000507003 1829 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
NUP88Q99567 AC019072.1-201ENST00000604535 1551 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
NUP88Q99567 SNORA73.1-201ENST00000363107 205 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 RNA5SP332-201ENST00000391063 115 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 AL049545.1-201ENST00000401856 572 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 RNA5SP345-201ENST00000410646 108 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC5.65□□□□□ -1.5
NUP88Q99567 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC5.65□□□□□ -1.5
NUP88Q99567 AL450992.3-201ENST00000413192 568 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 AC119751.6-201ENST00000416712 186 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 FABP7P1-201ENST00000424004 391 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 RPS26P40-201ENST00000435209 294 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 GTF2IP7-202ENST00000436677 309 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 AC092393.1-201ENST00000439625 742 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.65□□□□□ -1.5
NUP88Q99567 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC5.65□□□□□ -1.5
NUP88Q99567 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
NUP88Q99567 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.65□□□□□ -1.5
NUP88Q99567 AC108734.3-201ENST00000481241 1165 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 MTND2P14-201ENST00000482139 351 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC5.65□□□□□ -1.5
NUP88Q99567 OR51K1P-201ENST00000510214 950 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC5.65□□□□□ -1.5
NUP88Q99567 AC118465.1-201ENST00000513820 1271 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 AC105031.1-201ENST00000518550 476 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.65□□□□□ -1.5
NUP88Q99567 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.65□□□□□ -1.5
NUP88Q99567 OR4C2P-201ENST00000530855 1064 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.65□□□□□ -1.5
NUP88Q99567 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC5.65□□□□□ -1.5
NUP88Q99567 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.65□□□□□ -1.5
NUP88Q99567 MIR4472-2-201ENST00000582069 67 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.65□□□□□ -1.5
NUP88Q99567 AC091488.1-201ENST00000604239 660 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 AC104687.2-201ENST00000604442 342 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 AC010424.2-201ENST00000607594 443 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC5.65□□□□□ -1.5
NUP88Q99567 AC078883.4-201ENST00000623218 367 ntBASIC5.65□□□□□ -1.5
NUP88Q99567 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC5.65□□□□□ -1.5
NUP88Q99567 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
NUP88Q99567 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
NUP88Q99567 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.65□□□□□ -1.51
NUP88Q99567 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
NUP88Q99567 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
NUP88Q99567 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC5.65□□□□□ -1.51
NUP88Q99567 AL672167.1-204ENST00000641875 3017 ntBASIC5.65□□□□□ -1.51
NUP88Q99567 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
NUP88Q99567 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.51
NUP88Q99567 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
NUP88Q99567 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
NUP88Q99567 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.65□□□□□ -1.51
NUP88Q99567 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
NUP88Q99567 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.51
NUP88Q99567 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
NUP88Q99567 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
NUP88Q99567 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.64□□□□□ -1.51
NUP88Q99567 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
NUP88Q99567 AP000542.2-201ENST00000623199 6179 ntBASIC5.64□□□□□ -1.51
NUP88Q99567 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
NUP88Q99567 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
NUP88Q99567 AC126755.2-208ENST00000327792 462 ntBASIC5.64□□□□□ -1.51
NUP88Q99567 AC138969.1-213ENST00000331436 462 ntBASIC5.64□□□□□ -1.51
NUP88Q99567 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.64□□□□□ -1.51
NUP88Q99567 RNU6-83P-201ENST00000384568 112 ntBASIC5.64□□□□□ -1.51
NUP88Q99567 AC136624.1-201ENST00000400791 413 ntBASIC5.64□□□□□ -1.51
NUP88Q99567 RN7SKP106-201ENST00000410832 272 ntBASIC5.64□□□□□ -1.51
NUP88Q99567 AC013429.2-201ENST00000418798 781 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms