Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC114967.1-201ENST00000504890 259 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC109481.1-201ENST00000509173 282 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC010486.1-201ENST00000511793 424 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC6.2□□□□□ -1.42
SOX4Q06945 HMGB1P23-201ENST00000518743 568 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC078814.3-201ENST00000553036 491 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 HSPE1P2-201ENST00000554777 306 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 CYCSP2-201ENST00000558168 301 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC6.2□□□□□ -1.42
SOX4Q06945 MIR3682-201ENST00000581338 84 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.2□□□□□ -1.42
SOX4Q06945 BNIP3P22-201ENST00000593399 556 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 BNIP3P23-201ENST00000599655 511 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC012507.3-201ENST00000603556 477 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 FO393422.1-201ENST00000603908 708 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AP004247.3-201ENST00000608682 624 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC022467.1-201ENST00000614738 749 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC008115.3-201ENST00000614874 549 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC006504.8-201ENST00000621046 635 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 AC139792.3-201ENST00000623525 224 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 CU639417.4-201ENST00000623928 207 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 PISRT1-201ENST00000626175 531 ntBASIC6.2□□□□□ -1.42
SOX4Q06945 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
SOX4Q06945 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SOX4Q06945 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SOX4Q06945 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
SOX4Q06945 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.2□□□□□ -1.42
SOX4Q06945 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
SOX4Q06945 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.2□□□□□ -1.42
SOX4Q06945 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SOX4Q06945 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
SOX4Q06945 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
SOX4Q06945 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.19□□□□□ -1.42
SOX4Q06945 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC6.19□□□□□ -1.42
SOX4Q06945 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.19□□□□□ -1.42
SOX4Q06945 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
SOX4Q06945 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 Y_RNA.58-201ENST00000362807 102 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 Y_RNA.154-201ENST00000363624 102 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 RNY3P1-201ENST00000365085 102 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 SNORD81.2-201ENST00000365153 76 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 RNA5-8SP5-201ENST00000365304 152 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 RNY3-201ENST00000365484 102 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 Y_RNA.490-201ENST00000384413 102 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 RNU6-809P-201ENST00000384461 107 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 RNU6-195P-201ENST00000411352 109 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC6.19□□□□□ -1.42
SOX4Q06945 OR6E1P-201ENST00000414424 923 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 MTND3P17-201ENST00000416968 344 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 SNRPEP10-201ENST00000420249 274 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 SDCBPP2-201ENST00000424643 885 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 AL121776.1-201ENST00000429337 372 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC6.19□□□□□ -1.42
SOX4Q06945 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX4Q06945 HMGB3P9-201ENST00000441799 583 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 USP9YP15-201ENST00000442391 422 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC6.19□□□□□ -1.42
SOX4Q06945 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX4Q06945 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC6.19□□□□□ -1.42
SOX4Q06945 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX4Q06945 C1DP4-201ENST00000455429 424 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 RPS26P39-201ENST00000469206 341 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX4Q06945 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX4Q06945 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX4Q06945 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX4Q06945 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC6.19□□□□□ -1.42
SOX4Q06945 AC022690.1-201ENST00000526681 550 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 AP003034.1-201ENST00000534621 422 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX4Q06945 AC008127.2-201ENST00000549925 1075 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 AC007424.1-203ENST00000554613 687 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 PSMA3P-201ENST00000555485 635 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC6.19□□□□□ -1.42
SOX4Q06945 H3F3BP2-201ENST00000583907 357 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 SS18L2P2-201ENST00000583960 235 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC6.19□□□□□ -1.42
SOX4Q06945 AL136363.1-201ENST00000605349 337 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX4Q06945 AC093388.1-201ENST00000609166 430 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC6.19□□□□□ -1.42
SOX4Q06945 AC091905.1-201ENST00000624400 311 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC6.19□□□□□ -1.42
SOX4Q06945 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.19□□□□□ -1.42
SOX4Q06945 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 MAPK10-261ENST00000641050 3109 ntBASIC6.19□□□□□ -1.42
SOX4Q06945 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC6.19□□□□□ -1.42
SOX4Q06945 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SOX4Q06945 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms