Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.19□□□□□ -1.74
LMX1BO60663 SNORD116-9-201ENST00000384000 95 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 SNORD116-3-201ENST00000384287 95 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 SNORD116-7-201ENST00000384404 95 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 SNORD116-5-201ENST00000384462 95 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 SNORD96B-201ENST00000386148 79 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 ARL4AP5-201ENST00000404372 599 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AP000580.1-201ENST00000404439 358 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.19□□□□□ -1.74
LMX1BO60663 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
LMX1BO60663 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.19□□□□□ -1.74
LMX1BO60663 RNA5SP345-201ENST00000410646 108 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC4.19□□□□□ -1.74
LMX1BO60663 OR6C64P-201ENST00000419708 825 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 PTP4A1P5-201ENST00000420305 455 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC4.19□□□□□ -1.74
LMX1BO60663 RPF2P1-201ENST00000424137 906 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 RAC1P8-201ENST00000427086 527 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 MTCO3P5-201ENST00000433620 714 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AC093716.1-201ENST00000435923 377 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 UBE2D3P1-201ENST00000436669 444 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC4.19□□□□□ -1.74
LMX1BO60663 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC4.19□□□□□ -1.74
LMX1BO60663 RPL34P26-201ENST00000445636 354 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 ZNF736P5Y-201ENST00000451173 805 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AC234781.3-201ENST00000452540 973 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 CALM1P2-201ENST00000452941 448 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 RPL23AP56-201ENST00000460778 453 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC4.19□□□□□ -1.74
LMX1BO60663 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
LMX1BO60663 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC4.19□□□□□ -1.74
LMX1BO60663 OR5BM1P-201ENST00000512021 366 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC4.19□□□□□ -1.74
LMX1BO60663 AC108120.2-201ENST00000512973 294 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.19□□□□□ -1.74
LMX1BO60663 HMGB1P1-201ENST00000522557 636 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.19□□□□□ -1.74
LMX1BO60663 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.19□□□□□ -1.74
LMX1BO60663 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC4.19□□□□□ -1.74
LMX1BO60663 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.19□□□□□ -1.74
LMX1BO60663 AP003461.1-201ENST00000528866 78 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 ERP27-202ENST00000540097 993 ntTSL 2 BASIC4.19□□□□□ -1.74
LMX1BO60663 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.19□□□□□ -1.74
LMX1BO60663 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.19□□□□□ -1.74
LMX1BO60663 FKBP1BP1-201ENST00000553366 325 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AL390334.1-201ENST00000556395 450 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC4.19□□□□□ -1.74
LMX1BO60663 AC090695.1-201ENST00000561269 1222 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AC090888.1-201ENST00000561335 1141 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 SNORA74C-1-201ENST00000580726 201 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AC209154.1-201ENST00000582156 337 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AP001269.3-201ENST00000588718 329 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AC068790.4-201ENST00000602474 263 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.19□□□□□ -1.74
LMX1BO60663 RNF138P2-201ENST00000603490 592 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AC018618.2-201ENST00000604770 446 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AL392112.1-201ENST00000605115 829 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AL445423.1-201ENST00000609941 536 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AC074140.1-201ENST00000621617 208 ntBASIC4.19□□□□□ -1.74
LMX1BO60663 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.19□□□□□ -1.74
LMX1BO60663 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
LMX1BO60663 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
LMX1BO60663 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.19□□□□□ -1.74
LMX1BO60663 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
LMX1BO60663 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
LMX1BO60663 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
LMX1BO60663 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
LMX1BO60663 BX005019.1-201ENST00000561881 1810 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.18□□□□□ -1.74
LMX1BO60663 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
LMX1BO60663 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
LMX1BO60663 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.18□□□□□ -1.74
LMX1BO60663 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
LMX1BO60663 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
LMX1BO60663 AC111188.2-201ENST00000529697 1387 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
LMX1BO60663 AC005261.4-201ENST00000600047 1385 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 DDX43P2-201ENST00000604753 1354 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
LMX1BO60663 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
LMX1BO60663 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
LMX1BO60663 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.18□□□□□ -1.74
LMX1BO60663 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.18□□□□□ -1.74
LMX1BO60663 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
LMX1BO60663 RNA5SP27-201ENST00000363839 119 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
LMX1BO60663 Y_RNA.436-201ENST00000384097 102 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 SNORD116-4-201ENST00000384733 96 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 AL590084.1-201ENST00000407885 387 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 RNA5SP296-201ENST00000410523 111 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 RN7SKP182-201ENST00000410772 298 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC4.18□□□□□ -1.74
LMX1BO60663 AL590806.1-201ENST00000415818 853 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.18□□□□□ -1.74
LMX1BO60663 AC246680.2-201ENST00000422106 389 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 FABP7P1-201ENST00000424004 391 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 AC093084.1-201ENST00000424233 687 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 NMNAT1P2-201ENST00000435192 860 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 COX7BP2-201ENST00000437976 242 ntBASIC4.18□□□□□ -1.74
LMX1BO60663 ARL4AP3-201ENST00000441452 574 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms