Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
NUP88Q99567 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NUP88Q99567 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP88Q99567 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
NUP88Q99567 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC010266.2-201ENST00000564741 3255 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
NUP88Q99567 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
NUP88Q99567 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
NUP88Q99567 ASNSP1-204ENST00000641977 1664 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
NUP88Q99567 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.67□□□□□ -1.5
NUP88Q99567 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
NUP88Q99567 FAM133CP-201ENST00000332869 704 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP88Q99567 GLULP6-201ENST00000399502 913 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 RNU6-272P-201ENST00000411028 104 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 AC016397.1-201ENST00000412463 242 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 AC245028.1-201ENST00000423259 256 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP88Q99567 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC5.67□□□□□ -1.5
NUP88Q99567 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NUP88Q99567 HSD52-202ENST00000436225 772 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC005154.2-201ENST00000438110 379 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 GTF3AP5-201ENST00000442645 697 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP88Q99567 EXTL2P1-201ENST00000446218 416 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 OR6K5P-201ENST00000447050 945 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.67□□□□□ -1.5
NUP88Q99567 TPT1P13-201ENST00000449760 499 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.67□□□□□ -1.5
NUP88Q99567 AL513533.1-201ENST00000453728 415 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP88Q99567 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC011979.1-201ENST00000472300 483 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC011005.3-201ENST00000491624 395 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP88Q99567 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC093755.1-201ENST00000512950 1023 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.67□□□□□ -1.5
NUP88Q99567 RGS4-207ENST00000527809 817 ntTSL 4 BASIC5.67□□□□□ -1.5
NUP88Q99567 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.67□□□□□ -1.5
NUP88Q99567 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC009094.1-201ENST00000564443 426 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 AL354943.1-201ENST00000572103 781 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP88Q99567 MIR4666A-201ENST00000580160 79 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP88Q99567 AC097478.2-201ENST00000610572 514 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 MIR378J-201ENST00000611988 109 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP88Q99567 MIR6853-201ENST00000619642 74 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 BX005214.3-202ENST00000619809 325 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 AC017037.3-201ENST00000625016 472 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP88Q99567 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP88Q99567 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP88Q99567 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NUP88Q99567 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NUP88Q99567 NF1-214ENST00000490416 1329 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP88Q99567 DCAF13P3-201ENST00000561147 1334 ntBASIC5.67□□□□□ -1.5
NUP88Q99567 AC092162.3-201ENST00000624511 1624 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.66□□□□□ -1.5
NUP88Q99567 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.66□□□□□ -1.5
NUP88Q99567 NCLP2-201ENST00000416078 1462 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP88Q99567 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 AL590240.1-201ENST00000334118 313 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 TAF9BP1-201ENST00000396646 746 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 RNU2-6P-201ENST00000411404 190 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 NPM1P40-201ENST00000412758 733 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AC107081.1-201ENST00000414975 361 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC5.66□□□□□ -1.5
NUP88Q99567 QRSL1P2-201ENST00000418582 964 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AC007435.1-201ENST00000421086 415 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AC009965.2-201ENST00000425328 970 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP88Q99567 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP88Q99567 NPM1P24-201ENST00000428039 894 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.66□□□□□ -1.5
NUP88Q99567 NRBF2P3-201ENST00000432731 865 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 COX7BP2-201ENST00000437976 242 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 NPM1P39-201ENST00000449818 867 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NUP88Q99567 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP88Q99567 AC006511.1-201ENST00000470614 315 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AC104971.1-201ENST00000495117 578 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 AC109471.1-201ENST00000511631 612 ntBASIC5.66□□□□□ -1.5
NUP88Q99567 RPL7L1P13-201ENST00000511702 739 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms