Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
RNF4P78317 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC5.71□□□□□ -1.5
RNF4P78317 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.71□□□□□ -1.5
RNF4P78317 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.7□□□□□ -1.5
RNF4P78317 AC022325.1-201ENST00000502748 2199 ntBASIC5.7□□□□□ -1.5
RNF4P78317 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
RNF4P78317 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.7□□□□□ -1.5
RNF4P78317 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.7□□□□□ -1.5
RNF4P78317 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
RNF4P78317 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.7□□□□□ -1.5
RNF4P78317 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC5.7□□□□□ -1.5
RNF4P78317 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC5.7□□□□□ -1.5
RNF4P78317 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
RNF4P78317 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
RNF4P78317 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
RNF4P78317 RNU1-134P-201ENST00000362935 165 ntBASIC5.7□□□□□ -1.5
RNF4P78317 Y_RNA.263-201ENST00000364659 114 ntBASIC5.7□□□□□ -1.5
RNF4P78317 Y_RNA.356-201ENST00000365475 113 ntBASIC5.7□□□□□ -1.5
RNF4P78317 SNORA51.9-201ENST00000384295 124 ntBASIC5.7□□□□□ -1.5
RNF4P78317 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
RNF4P78317 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.7□□□□□ -1.5
RNF4P78317 RPL35AP31-201ENST00000418340 337 ntBASIC5.7□□□□□ -1.5
RNF4P78317 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.7□□□□□ -1.5
RNF4P78317 RPEP2-201ENST00000432149 701 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AC023141.3-201ENST00000436698 278 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AL353662.1-201ENST00000439099 327 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AMYP1-201ENST00000440059 1023 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AC093019.1-201ENST00000443135 252 ntBASIC5.7□□□□□ -1.5
RNF4P78317 RPL17P49-201ENST00000443728 411 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC5.7□□□□□ -1.5
RNF4P78317 Z83838.1-202ENST00000456225 839 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AC022364.2-201ENST00000457963 554 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AOX3P-204ENST00000491025 2107 ntBASIC5.7□□□□□ -1.5
RNF4P78317 RNU6-1281P-201ENST00000516223 105 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.7□□□□□ -1.5
RNF4P78317 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.7□□□□□ -1.5
RNF4P78317 AF235103.2-201ENST00000525753 346 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.7□□□□□ -1.5
RNF4P78317 AP003181.2-201ENST00000528941 181 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AC027026.1-201ENST00000532323 742 ntBASIC5.7□□□□□ -1.5
RNF4P78317 TOMM20P1-201ENST00000534518 427 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AC090424.1-201ENST00000535243 736 ntBASIC5.7□□□□□ -1.5
RNF4P78317 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.7□□□□□ -1.5
RNF4P78317 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.7□□□□□ -1.5
RNF4P78317 CBX3P5-201ENST00000552017 521 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.7□□□□□ -1.5
RNF4P78317 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.7□□□□□ -1.5
RNF4P78317 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.7□□□□□ -1.5
RNF4P78317 AL359212.1-201ENST00000556608 614 ntBASIC5.7□□□□□ -1.5
RNF4P78317 SULT1C2P1-202ENST00000562418 459 ntBASIC5.7□□□□□ -1.5
RNF4P78317 MIR5186-201ENST00000577504 120 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.7□□□□□ -1.5
RNF4P78317 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.7□□□□□ -1.5
RNF4P78317 VN1R84P-201ENST00000593697 235 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.7□□□□□ -1.5
RNF4P78317 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC5.7□□□□□ -1.5
RNF4P78317 AC078795.3-201ENST00000602913 472 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AC245014.2-201ENST00000603689 287 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AC246785.4-201ENST00000605374 287 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AL136221.1-201ENST00000621449 509 ntBASIC5.7□□□□□ -1.5
RNF4P78317 FER-210ENST00000628534 558 ntTSL 5 BASIC5.7□□□□□ -1.5
RNF4P78317 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC5.7□□□□□ -1.5
RNF4P78317 AC112487.2-201ENST00000637950 304 ntBASIC5.7□□□□□ -1.5
RNF4P78317 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.7□□□□□ -1.5
RNF4P78317 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
RNF4P78317 AC024587.1-201ENST00000505925 2157 ntBASIC5.7□□□□□ -1.5
RNF4P78317 AC022034.1-201ENST00000512867 2156 ntBASIC5.7□□□□□ -1.5
RNF4P78317 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
RNF4P78317 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
RNF4P78317 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
RNF4P78317 ZNF680P1-201ENST00000436625 1469 ntBASIC5.7□□□□□ -1.5
RNF4P78317 ANKRD62P1-201ENST00000434304 1623 ntBASIC5.7□□□□□ -1.5
RNF4P78317 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.7□□□□□ -1.5
RNF4P78317 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 AC006026.1-201ENST00000444025 1803 ntBASIC5.69□□□□□ -1.5
RNF4P78317 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.69□□□□□ -1.5
RNF4P78317 TRIM51GP-201ENST00000534741 1350 ntBASIC5.69□□□□□ -1.5
RNF4P78317 AC138915.3-201ENST00000562908 1389 ntBASIC5.69□□□□□ -1.5
RNF4P78317 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.69□□□□□ -1.5
RNF4P78317 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
RNF4P78317 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
RNF4P78317 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 COX6B1P3-201ENST00000312310 260 ntBASIC5.69□□□□□ -1.5
RNF4P78317 RNA5SP433-201ENST00000364491 114 ntBASIC5.69□□□□□ -1.5
RNF4P78317 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.69□□□□□ -1.5
RNF4P78317 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
RNF4P78317 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
RNF4P78317 RPS20P2-201ENST00000402520 389 ntBASIC5.69□□□□□ -1.5
RNF4P78317 SNORA11.5-201ENST00000408163 128 ntBASIC5.69□□□□□ -1.5
RNF4P78317 AP000534.2-201ENST00000412729 568 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms