Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CDX1P47902 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CDX1P47902 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.02□□□□□ -1.77
CDX1P47902 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CDX1P47902 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CDX1P47902 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CDX1P47902 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CDX1P47902 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
CDX1P47902 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CDX1P47902 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CDX1P47902 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CDX1P47902 AL355852.1-201ENST00000454081 1771 ntBASIC4.02□□□□□ -1.77
CDX1P47902 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.02□□□□□ -1.77
CDX1P47902 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CDX1P47902 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.01□□□□□ -1.77
CDX1P47902 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.01□□□□□ -1.77
CDX1P47902 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.01□□□□□ -1.77
CDX1P47902 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CDX1P47902 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CDX1P47902 AC131971.1-201ENST00000332881 1482 ntBASIC4.01□□□□□ -1.77
CDX1P47902 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.01□□□□□ -1.77
CDX1P47902 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CDX1P47902 SNURFL-201ENST00000309296 343 ntBASIC4.01□□□□□ -1.77
CDX1P47902 RNU5E-10P-201ENST00000363506 118 ntBASIC4.01□□□□□ -1.77
CDX1P47902 MIR589-201ENST00000385238 99 ntBASIC4.01□□□□□ -1.77
CDX1P47902 GLULP6-201ENST00000399502 913 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AL589647.1-201ENST00000402485 466 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AL133270.1-201ENST00000402635 279 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AL592291.1-201ENST00000403830 352 ntBASIC4.01□□□□□ -1.77
CDX1P47902 RNU6-575P-201ENST00000411326 105 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4.01□□□□□ -1.77
CDX1P47902 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.01□□□□□ -1.77
CDX1P47902 RPS7P9-201ENST00000414704 586 ntBASIC4.01□□□□□ -1.77
CDX1P47902 RPS15AP40-201ENST00000419621 391 ntBASIC4.01□□□□□ -1.77
CDX1P47902 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
CDX1P47902 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC4.01□□□□□ -1.77
CDX1P47902 EI24P4-201ENST00000423683 1078 ntBASIC4.01□□□□□ -1.77
CDX1P47902 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC4.01□□□□□ -1.77
CDX1P47902 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.01□□□□□ -1.77
CDX1P47902 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC4.01□□□□□ -1.77
CDX1P47902 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC4.01□□□□□ -1.77
CDX1P47902 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.01□□□□□ -1.77
CDX1P47902 MTCYBP42-201ENST00000444653 1130 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.01□□□□□ -1.77
CDX1P47902 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.01□□□□□ -1.77
CDX1P47902 RPS15AP1-201ENST00000457423 391 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AC231760.1-201ENST00000498002 260 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AC096571.1-202ENST00000506634 735 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AC093752.1-206ENST00000511823 336 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CDX1P47902 RN7SKP147-201ENST00000517154 244 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AC091163.3-201ENST00000518269 1144 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AC023632.1-201ENST00000518463 375 ntBASIC4.01□□□□□ -1.77
CDX1P47902 MTCO3P15-201ENST00000526563 574 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.01□□□□□ -1.77
CDX1P47902 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.01□□□□□ -1.77
CDX1P47902 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.01□□□□□ -1.77
CDX1P47902 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC4.01□□□□□ -1.77
CDX1P47902 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.01□□□□□ -1.77
CDX1P47902 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.01□□□□□ -1.77
CDX1P47902 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.01□□□□□ -1.77
CDX1P47902 MIR4504-201ENST00000577413 92 ntBASIC4.01□□□□□ -1.77
CDX1P47902 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.01□□□□□ -1.77
CDX1P47902 AC008536.1-201ENST00000602872 669 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC4.01□□□□□ -1.77
CDX1P47902 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.01□□□□□ -1.77
CDX1P47902 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.01□□□□□ -1.77
CDX1P47902 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.01□□□□□ -1.77
CDX1P47902 EIF3FP1-201ENST00000613970 806 ntBASIC4.01□□□□□ -1.77
CDX1P47902 AC022960.3-201ENST00000619794 441 ntBASIC4.01□□□□□ -1.77
CDX1P47902 RMST_9.1-201ENST00000619945 193 ntBASIC4.01□□□□□ -1.77
CDX1P47902 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.01□□□□□ -1.77
CDX1P47902 ZNF663P-202ENST00000641770 1131 ntBASIC4.01□□□□□ -1.77
CDX1P47902 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CDX1P47902 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CDX1P47902 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.01□□□□□ -1.77
CDX1P47902 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
CDX1P47902 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CDX1P47902 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CDX1P47902 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CDX1P47902 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.01□□□□□ -1.77
CDX1P47902 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
CDX1P47902 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4□□□□□ -1.77
CDX1P47902 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4□□□□□ -1.77
CDX1P47902 AC090229.1-201ENST00000590983 1609 ntBASIC4□□□□□ -1.77
CDX1P47902 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
CDX1P47902 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4□□□□□ -1.77
CDX1P47902 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4□□□□□ -1.77
CDX1P47902 RNU1-20P-201ENST00000363314 162 ntBASIC4□□□□□ -1.77
CDX1P47902 RN7SKP113-201ENST00000363891 295 ntBASIC4□□□□□ -1.77
CDX1P47902 RNU4-4P-201ENST00000364588 130 ntBASIC4□□□□□ -1.77
CDX1P47902 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms