Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 CIR1P1-201ENST00000524055 1133 ntBASIC3.98□□□□□ -1.77
SDC1P18827 OR5AN2P-201ENST00000534535 896 ntBASIC3.98□□□□□ -1.77
SDC1P18827 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 AC137768.1-201ENST00000549998 553 ntBASIC3.98□□□□□ -1.77
SDC1P18827 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC3.98□□□□□ -1.77
SDC1P18827 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC3.98□□□□□ -1.77
SDC1P18827 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 AL121873.1-201ENST00000616013 524 ntBASIC3.98□□□□□ -1.77
SDC1P18827 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC1P18827 AC097460.3-201ENST00000623099 442 ntBASIC3.98□□□□□ -1.77
SDC1P18827 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 AL356489.2-201ENST00000566968 3528 ntBASIC3.98□□□□□ -1.77
SDC1P18827 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
SDC1P18827 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC1P18827 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SDC1P18827 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SDC1P18827 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.98□□□□□ -1.77
SDC1P18827 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SDC1P18827 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
SDC1P18827 AC068254.2-201ENST00000623938 3577 ntBASIC3.97□□□□□ -1.77
SDC1P18827 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SDC1P18827 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SDC1P18827 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
SDC1P18827 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.97□□□□□ -1.77
SDC1P18827 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.97□□□□□ -1.77
SDC1P18827 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SDC1P18827 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SDC1P18827 SNORA40.4-201ENST00000390971 128 ntBASIC3.97□□□□□ -1.77
SDC1P18827 AC093719.1-202ENST00000392735 373 ntBASIC3.97□□□□□ -1.77
SDC1P18827 AC004552.1-201ENST00000419089 348 ntBASIC3.97□□□□□ -1.77
SDC1P18827 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.97□□□□□ -1.77
SDC1P18827 BRWD1P3-201ENST00000428816 390 ntBASIC3.97□□□□□ -1.77
SDC1P18827 VDAC1P6-201ENST00000430062 855 ntBASIC3.97□□□□□ -1.77
SDC1P18827 RPS29P17-201ENST00000430795 166 ntBASIC3.97□□□□□ -1.77
SDC1P18827 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC1P18827 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.97□□□□□ -1.77
SDC1P18827 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC1P18827 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC1P18827 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC1P18827 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC1P18827 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SDC1P18827 RPS26P3-201ENST00000470205 348 ntBASIC3.97□□□□□ -1.77
SDC1P18827 AC109327.1-201ENST00000471666 403 ntBASIC3.97□□□□□ -1.77
SDC1P18827 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC1P18827 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
SDC1P18827 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC3.97□□□□□ -1.77
SDC1P18827 AC090543.2-201ENST00000483963 348 ntBASIC3.97□□□□□ -1.77
SDC1P18827 AC004057.1-201ENST00000485827 348 ntBASIC3.97□□□□□ -1.77
SDC1P18827 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC1P18827 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC3.97□□□□□ -1.77
SDC1P18827 AC008958.1-201ENST00000511047 682 ntBASIC3.97□□□□□ -1.77
SDC1P18827 AC027338.1-201ENST00000514840 825 ntBASIC3.97□□□□□ -1.77
SDC1P18827 HNRNPKP5-201ENST00000515300 253 ntBASIC3.97□□□□□ -1.77
SDC1P18827 RNU6-467P-201ENST00000517027 110 ntBASIC3.97□□□□□ -1.77
SDC1P18827 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SDC1P18827 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC1P18827 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
SDC1P18827 OSBPL9P3-201ENST00000534523 595 ntBASIC3.97□□□□□ -1.77
SDC1P18827 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.97□□□□□ -1.77
SDC1P18827 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SDC1P18827 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC3.97□□□□□ -1.77
SDC1P18827 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.97□□□□□ -1.77
SDC1P18827 AL136520.1-202ENST00000555494 763 ntBASIC3.97□□□□□ -1.77
SDC1P18827 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC1P18827 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC1P18827 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC1P18827 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC1P18827 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.97□□□□□ -1.77
SDC1P18827 AC005776.1-201ENST00000603164 290 ntBASIC3.97□□□□□ -1.77
SDC1P18827 AC079880.2-201ENST00000603790 1213 ntBASIC3.97□□□□□ -1.77
SDC1P18827 AC009704.2-201ENST00000618739 483 ntBASIC3.97□□□□□ -1.77
SDC1P18827 AC095038.2-201ENST00000621464 1070 ntBASIC3.97□□□□□ -1.77
SDC1P18827 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.97□□□□□ -1.77
SDC1P18827 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.97□□□□□ -1.77
SDC1P18827 HSPD1P11-201ENST00000508643 1702 ntBASIC3.97□□□□□ -1.77
SDC1P18827 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
SDC1P18827 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SDC1P18827 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SDC1P18827 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SDC1P18827 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
SDC1P18827 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
SDC1P18827 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SDC1P18827 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
SDC1P18827 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
SDC1P18827 AC027290.2-201ENST00000623210 18662 ntBASIC3.96□□□□□ -1.77
SDC1P18827 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.96□□□□□ -1.77
SDC1P18827 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.96□□□□□ -1.77
SDC1P18827 MARK2P15-201ENST00000432204 2186 ntBASIC3.96□□□□□ -1.78
SDC1P18827 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
SDC1P18827 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SDC1P18827 AL133243.3-201ENST00000617415 3004 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms