Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MIR199A2-201ENST00000385289 110 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A4P53420 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.16□□□□□ -1.74
COL4A4P53420 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A4P53420 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.16□□□□□ -1.74
COL4A4P53420 AL591363.1-201ENST00000450091 483 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A4P53420 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.16□□□□□ -1.74
COL4A4P53420 AC017037.1-201ENST00000508460 471 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.16□□□□□ -1.74
COL4A4P53420 AC090136.1-201ENST00000520009 240 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 DEFB109D-201ENST00000529497 240 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.16□□□□□ -1.74
COL4A4P53420 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.16□□□□□ -1.74
COL4A4P53420 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.16□□□□□ -1.74
COL4A4P53420 AC116312.1-201ENST00000606841 314 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.16□□□□□ -1.74
COL4A4P53420 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.16□□□□□ -1.74
COL4A4P53420 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.16□□□□□ -1.74
COL4A4P53420 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A4P53420 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.16□□□□□ -1.74
COL4A4P53420 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
COL4A4P53420 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.16□□□□□ -1.74
COL4A4P53420 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A4P53420 MIR128-1-201ENST00000384921 82 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 VN1R51P-201ENST00000411675 945 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 AL133162.1-201ENST00000463228 453 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.16□□□□□ -1.74
COL4A4P53420 AC005726.1-201ENST00000494679 427 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 HMGN1P11-201ENST00000508668 303 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.16□□□□□ -1.74
COL4A4P53420 RN7SKP289-201ENST00000517244 295 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A4P53420 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A4P53420 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A4P53420 AC008802.1-201ENST00000519121 791 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A4P53420 RPL23AP87-202ENST00000573039 466 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 AC011816.2-201ENST00000607089 556 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 AL158211.2-201ENST00000607282 395 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 AC090246.1-201ENST00000616499 426 ntBASIC4.16□□□□□ -1.74
COL4A4P53420 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A4P53420 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.16□□□□□ -1.74
COL4A4P53420 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.16□□□□□ -1.74
COL4A4P53420 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.15□□□□□ -1.74
COL4A4P53420 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
COL4A4P53420 LINC01109-201ENST00000603837 3081 ntBASIC4.15□□□□□ -1.74
COL4A4P53420 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
COL4A4P53420 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.15□□□□□ -1.74
COL4A4P53420 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
COL4A4P53420 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL4A4P53420 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
COL4A4P53420 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
COL4A4P53420 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL4A4P53420 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL4A4P53420 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL4A4P53420 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL4A4P53420 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.15□□□□□ -1.75
COL4A4P53420 AL390879.2-203ENST00000426943 1121 ntBASIC4.15□□□□□ -1.75
COL4A4P53420 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL4A4P53420 SUN3-208ENST00000453192 801 ntTSL 5 BASIC4.15□□□□□ -1.75
COL4A4P53420 AC104849.1-201ENST00000462623 405 ntBASIC4.15□□□□□ -1.75
COL4A4P53420 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC4.15□□□□□ -1.75
COL4A4P53420 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.15□□□□□ -1.75
COL4A4P53420 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL4A4P53420 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.15□□□□□ -1.75
COL4A4P53420 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL4A4P53420 AC012417.1-201ENST00000582307 1039 ntBASIC4.15□□□□□ -1.75
COL4A4P53420 AP005262.1-201ENST00000582646 997 ntBASIC4.15□□□□□ -1.75
COL4A4P53420 MIR5187-201ENST00000583479 76 ntBASIC4.15□□□□□ -1.75
COL4A4P53420 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.15□□□□□ -1.75
COL4A4P53420 AL355365.1-201ENST00000616480 294 ntBASIC4.15□□□□□ -1.75
COL4A4P53420 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.15□□□□□ -1.75
COL4A4P53420 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL4A4P53420 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
COL4A4P53420 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL4A4P53420 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL4A4P53420 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL4A4P53420 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL4A4P53420 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.14□□□□□ -1.75
COL4A4P53420 MAPK10-303ENST00000641324 3959 ntBASIC4.14□□□□□ -1.75
COL4A4P53420 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.14□□□□□ -1.75
COL4A4P53420 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL4A4P53420 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL4A4P53420 SNORD35B-201ENST00000363660 87 ntBASIC4.14□□□□□ -1.75
COL4A4P53420 AL603766.1-201ENST00000407763 664 ntBASIC4.14□□□□□ -1.75
COL4A4P53420 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.14□□□□□ -1.75
COL4A4P53420 AL590609.2-201ENST00000421430 368 ntBASIC4.14□□□□□ -1.75
COL4A4P53420 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.14□□□□□ -1.75
COL4A4P53420 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.14□□□□□ -1.75
COL4A4P53420 RPL21P23-201ENST00000446654 460 ntBASIC4.14□□□□□ -1.75
COL4A4P53420 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.14□□□□□ -1.75
COL4A4P53420 AC025445.1-201ENST00000502728 300 ntBASIC4.14□□□□□ -1.75
COL4A4P53420 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.14□□□□□ -1.75
COL4A4P53420 IGKV2-38-201ENST00000517443 247 ntBASIC4.14□□□□□ -1.75
COL4A4P53420 AC004944.1-201ENST00000517807 3059 ntBASIC4.14□□□□□ -1.75
COL4A4P53420 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.14□□□□□ -1.75
COL4A4P53420 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.14□□□□□ -1.75
COL4A4P53420 AC012493.2-201ENST00000595083 291 ntBASIC4.14□□□□□ -1.75
COL4A4P53420 AL390816.3-201ENST00000604527 1066 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms