Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CFL1P4-201ENST00000451536 498 ntBASIC5.24□□□□□ -1.57
MSX2P35548 AC104339.1-201ENST00000465478 348 ntBASIC5.24□□□□□ -1.57
MSX2P35548 RN7SL570P-201ENST00000484405 292 ntBASIC5.24□□□□□ -1.57
MSX2P35548 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC5.24□□□□□ -1.57
MSX2P35548 RN7SL170P-201ENST00000487098 295 ntBASIC5.24□□□□□ -1.57
MSX2P35548 RPS4XP15-201ENST00000489210 795 ntBASIC5.24□□□□□ -1.57
MSX2P35548 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.24□□□□□ -1.57
MSX2P35548 FAM92A1P2-202ENST00000504766 877 ntBASIC5.24□□□□□ -1.57
MSX2P35548 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 AC117522.1-201ENST00000509821 380 ntBASIC5.24□□□□□ -1.57
MSX2P35548 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC5.24□□□□□ -1.57
MSX2P35548 AC021678.3-201ENST00000517893 476 ntBASIC5.24□□□□□ -1.57
MSX2P35548 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC5.24□□□□□ -1.57
MSX2P35548 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC5.24□□□□□ -1.57
MSX2P35548 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.24□□□□□ -1.57
MSX2P35548 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC5.24□□□□□ -1.57
MSX2P35548 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC5.24□□□□□ -1.57
MSX2P35548 AC027369.5-201ENST00000533838 755 ntBASIC5.24□□□□□ -1.57
MSX2P35548 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.24□□□□□ -1.57
MSX2P35548 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.24□□□□□ -1.57
MSX2P35548 PSMB7P1-201ENST00000556349 514 ntBASIC5.24□□□□□ -1.57
MSX2P35548 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC5.24□□□□□ -1.57
MSX2P35548 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.24□□□□□ -1.57
MSX2P35548 MIR3154-201ENST00000577829 84 ntBASIC5.24□□□□□ -1.57
MSX2P35548 MIR4310-201ENST00000582950 57 ntBASIC5.24□□□□□ -1.57
MSX2P35548 PRPF19P1-201ENST00000584766 898 ntBASIC5.24□□□□□ -1.57
MSX2P35548 MIR548AB-201ENST00000584917 84 ntBASIC5.24□□□□□ -1.57
MSX2P35548 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.24□□□□□ -1.57
MSX2P35548 AL390838.2-201ENST00000602394 274 ntBASIC5.24□□□□□ -1.57
MSX2P35548 AL137072.1-201ENST00000603444 466 ntBASIC5.24□□□□□ -1.57
MSX2P35548 AP001330.5-201ENST00000607176 411 ntBASIC5.24□□□□□ -1.57
MSX2P35548 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 uc_338.29-201ENST00000615099 168 ntBASIC5.24□□□□□ -1.57
MSX2P35548 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 MIR6778-201ENST00000617912 73 ntBASIC5.24□□□□□ -1.57
MSX2P35548 FAM27E2-201ENST00000619668 403 ntBASIC5.24□□□□□ -1.57
MSX2P35548 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX2P35548 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX2P35548 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
MSX2P35548 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
MSX2P35548 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX2P35548 Z99496.1-201ENST00000469424 1477 ntBASIC5.24□□□□□ -1.57
MSX2P35548 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.24□□□□□ -1.57
MSX2P35548 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX2P35548 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 AC093591.2-201ENST00000565254 3843 ntBASIC5.24□□□□□ -1.57
MSX2P35548 AL731532.2-201ENST00000623542 1953 ntBASIC5.24□□□□□ -1.57
MSX2P35548 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.24□□□□□ -1.57
MSX2P35548 AL353796.1-201ENST00000561542 3241 ntBASIC5.23□□□□□ -1.57
MSX2P35548 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSX2P35548 LYARP1-201ENST00000436977 1501 ntBASIC5.23□□□□□ -1.57
MSX2P35548 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.23□□□□□ -1.57
MSX2P35548 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSX2P35548 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
MSX2P35548 Y_RNA.70-201ENST00000362886 110 ntBASIC5.23□□□□□ -1.57
MSX2P35548 RNU5D-1-201ENST00000363299 116 ntBASIC5.23□□□□□ -1.57
MSX2P35548 Y_RNA.256-201ENST00000364594 104 ntBASIC5.23□□□□□ -1.57
MSX2P35548 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC5.23□□□□□ -1.57
MSX2P35548 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
MSX2P35548 MIR217-201ENST00000384817 110 ntBASIC5.23□□□□□ -1.57
MSX2P35548 MIR181A1-201ENST00000385026 110 ntBASIC5.23□□□□□ -1.57
MSX2P35548 RN7SKP56-201ENST00000410513 331 ntBASIC5.23□□□□□ -1.57
MSX2P35548 RPL21P32-201ENST00000419877 477 ntBASIC5.23□□□□□ -1.57
MSX2P35548 GAPDHP49-201ENST00000421421 961 ntBASIC5.23□□□□□ -1.57
MSX2P35548 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC5.23□□□□□ -1.57
MSX2P35548 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC5.23□□□□□ -1.57
MSX2P35548 RPL31P54-201ENST00000429803 370 ntBASIC5.23□□□□□ -1.57
MSX2P35548 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.23□□□□□ -1.57
MSX2P35548 RPL7P29-201ENST00000437151 728 ntBASIC5.23□□□□□ -1.57
MSX2P35548 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.23□□□□□ -1.57
MSX2P35548 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC5.23□□□□□ -1.57
MSX2P35548 MTND5P20-201ENST00000448677 143 ntBASIC5.23□□□□□ -1.57
MSX2P35548 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC5.23□□□□□ -1.57
MSX2P35548 RN7SL72P-201ENST00000460697 269 ntBASIC5.23□□□□□ -1.57
MSX2P35548 MTND6P6-201ENST00000478031 263 ntBASIC5.23□□□□□ -1.57
MSX2P35548 RPL9P6-201ENST00000492764 598 ntBASIC5.23□□□□□ -1.57
MSX2P35548 AC009120.1-201ENST00000493458 473 ntBASIC5.23□□□□□ -1.57
MSX2P35548 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC5.23□□□□□ -1.57
MSX2P35548 HMGB1P44-201ENST00000508597 572 ntBASIC5.23□□□□□ -1.57
MSX2P35548 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC5.23□□□□□ -1.57
MSX2P35548 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.23□□□□□ -1.57
MSX2P35548 AC016559.2-201ENST00000510759 359 ntBASIC5.23□□□□□ -1.57
MSX2P35548 RN7SKP238-201ENST00000516483 249 ntBASIC5.23□□□□□ -1.57
MSX2P35548 Y_RNA.702-201ENST00000516843 96 ntBASIC5.23□□□□□ -1.57
MSX2P35548 SCARNA20.4-201ENST00000516969 131 ntBASIC5.23□□□□□ -1.57
MSX2P35548 RN7SKP35-201ENST00000517210 151 ntBASIC5.23□□□□□ -1.57
MSX2P35548 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC5.23□□□□□ -1.57
MSX2P35548 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.23□□□□□ -1.57
MSX2P35548 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC5.23□□□□□ -1.57
MSX2P35548 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC5.23□□□□□ -1.57
MSX2P35548 GTF2IP8-201ENST00000560687 584 ntBASIC5.23□□□□□ -1.57
MSX2P35548 MT1CP-201ENST00000567054 174 ntBASIC5.23□□□□□ -1.57
MSX2P35548 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms