Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AC107027.3-201ENST00000565095 3473 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SMARCA1P28370 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SMARCA1P28370 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SMARCA1P28370 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
SMARCA1P28370 AL137100.1-201ENST00000556703 1620 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 AC009643.2-201ENST00000603543 1448 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
SMARCA1P28370 MTND5P31-201ENST00000419366 1374 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 RNU6-413P-201ENST00000384115 107 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 U3.30-201ENST00000391308 210 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 RN7SKP247-201ENST00000411094 308 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SMARCA1P28370 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.6□□□□□ -1.51
SMARCA1P28370 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.6□□□□□ -1.51
SMARCA1P28370 AC008072.1-201ENST00000434254 824 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 AC234064.1-201ENST00000436312 247 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 AL008629.1-201ENST00000438615 184 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC5.6□□□□□ -1.51
SMARCA1P28370 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.6□□□□□ -1.51
SMARCA1P28370 AC091685.2-201ENST00000454924 864 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 ATG12P2-201ENST00000456830 416 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 AC005229.2-201ENST00000456995 399 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 RNU6-1218P-201ENST00000458990 108 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 AC010468.1-201ENST00000461022 817 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 BET1P1-201ENST00000482276 359 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 RPS3AP22-201ENST00000488297 769 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC5.6□□□□□ -1.51
SMARCA1P28370 RPS23P1-201ENST00000491662 432 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 MTCO3P28-201ENST00000513351 515 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 RNU6-709P-201ENST00000517257 104 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC5.6□□□□□ -1.51
SMARCA1P28370 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC5.6□□□□□ -1.51
SMARCA1P28370 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.6□□□□□ -1.51
SMARCA1P28370 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.6□□□□□ -1.51
SMARCA1P28370 AP000926.4-201ENST00000527351 454 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SMARCA1P28370 AC124293.1-201ENST00000530034 493 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC5.6□□□□□ -1.51
SMARCA1P28370 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.6□□□□□ -1.51
SMARCA1P28370 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.6□□□□□ -1.51
SMARCA1P28370 UBE2FP2-201ENST00000566646 462 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 AL354943.1-201ENST00000572103 781 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 MIR5708-201ENST00000579723 85 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 MIR3667-201ENST00000581025 74 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.6□□□□□ -1.51
SMARCA1P28370 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SMARCA1P28370 AL512782.1-201ENST00000603093 364 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 AL031320.1-201ENST00000604177 357 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC5.6□□□□□ -1.51
SMARCA1P28370 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC5.6□□□□□ -1.51
SMARCA1P28370 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.6□□□□□ -1.51
SMARCA1P28370 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SMARCA1P28370 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.6□□□□□ -1.51
SMARCA1P28370 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.6□□□□□ -1.51
SMARCA1P28370 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.6□□□□□ -1.51
SMARCA1P28370 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
SMARCA1P28370 AC100778.3-201ENST00000580060 1750 ntBASIC5.6□□□□□ -1.51
SMARCA1P28370 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
SMARCA1P28370 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SMARCA1P28370 TLK1P1-201ENST00000456760 2440 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.59□□□□□ -1.51
SMARCA1P28370 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SMARCA1P28370 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
SMARCA1P28370 AC006042.3-201ENST00000454684 1469 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 AC100871.1-201ENST00000507871 1456 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 AC008079.2-201ENST00000623543 20396 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SMARCA1P28370 snoZ40.1-201ENST00000364540 72 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC5.59□□□□□ -1.51
SMARCA1P28370 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SMARCA1P28370 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SMARCA1P28370 RNU6-317P-201ENST00000384031 107 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC5.59□□□□□ -1.51
SMARCA1P28370 MTND4P22-201ENST00000413116 1169 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC5.59□□□□□ -1.51
SMARCA1P28370 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC5.59□□□□□ -1.51
SMARCA1P28370 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.59□□□□□ -1.51
SMARCA1P28370 RPS17P8-201ENST00000434525 335 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 AC009263.1-201ENST00000441193 1239 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC5.59□□□□□ -1.51
SMARCA1P28370 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.59□□□□□ -1.51
SMARCA1P28370 AC063943.1-201ENST00000465434 453 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC5.59□□□□□ -1.51
SMARCA1P28370 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.59□□□□□ -1.51
SMARCA1P28370 AC104971.1-201ENST00000495117 578 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 AC005912.1-201ENST00000495392 255 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.59□□□□□ -1.51
SMARCA1P28370 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SMARCA1P28370 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC5.59□□□□□ -1.51
SMARCA1P28370 AC022662.1-201ENST00000580252 331 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 MIR4480-201ENST00000582492 71 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 AP001542.2-201ENST00000593141 364 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 AC069304.3-201ENST00000603938 1084 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 AC021749.1-201ENST00000604322 607 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 AC116651.1-201ENST00000609724 556 ntBASIC5.59□□□□□ -1.51
SMARCA1P28370 AL360219.1-201ENST00000610230 366 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms