Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
VPS4BO75351 AC073136.1-201ENST00000449426 2884 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS4BO75351 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
VPS4BO75351 U8.4-201ENST00000363626 134 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 RNU6-1200P-201ENST00000384162 107 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 RNU1-77P-201ENST00000390868 162 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS4BO75351 AL590290.1-201ENST00000405336 380 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 RNA5SP296-201ENST00000410523 111 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4BO75351 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4BO75351 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4BO75351 TRBV24OR9-2-201ENST00000416632 435 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4BO75351 TIMM9P2-201ENST00000419324 266 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4BO75351 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS4BO75351 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS4BO75351 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS4BO75351 RPS7P5-201ENST00000441482 581 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 HIGD1AP8-201ENST00000453927 274 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 AC006463.2-201ENST00000473326 348 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.17□□□□□ -1.58
VPS4BO75351 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4BO75351 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.17□□□□□ -1.58
VPS4BO75351 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4BO75351 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4BO75351 PGAM1P13-201ENST00000507497 754 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 AC005178.1-201ENST00000508392 440 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
VPS4BO75351 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4BO75351 AC108471.1-201ENST00000513977 287 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4BO75351 HMGB1P23-201ENST00000518743 568 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.17□□□□□ -1.58
VPS4BO75351 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS4BO75351 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS4BO75351 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS4BO75351 NPM1P47-201ENST00000560843 856 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS4BO75351 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4BO75351 AC005341.1-201ENST00000571086 708 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 MIR3691-201ENST00000578066 90 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
VPS4BO75351 ELOCP28-201ENST00000590044 317 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 CLPTM1LP1-201ENST00000604519 484 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 AC064872.1-201ENST00000604823 1072 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 AC097505.1-201ENST00000610199 565 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 AC013562.2-201ENST00000611632 603 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 AP003497.2-201ENST00000624220 967 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 AF001550.2-201ENST00000636643 217 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4BO75351 AC005539.1-201ENST00000443768 1479 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
VPS4BO75351 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4BO75351 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4BO75351 ANKRD20A17P-201ENST00000511745 1330 ntBASIC5.17□□□□□ -1.58
VPS4BO75351 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4BO75351 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC5.17□□□□□ -1.58
VPS4BO75351 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
VPS4BO75351 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS4BO75351 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS4BO75351 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
VPS4BO75351 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS4BO75351 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS4BO75351 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS4BO75351 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
VPS4BO75351 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS4BO75351 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
VPS4BO75351 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS4BO75351 RNA5SP305-201ENST00000362665 119 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 RNA5SP234-201ENST00000363916 119 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 MOB4-205ENST00000409916 829 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS4BO75351 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.16□□□□□ -1.58
VPS4BO75351 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS4BO75351 P2RY10P2-201ENST00000416730 913 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS4BO75351 MTCO3P21-201ENST00000430791 643 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS4BO75351 AC010153.1-201ENST00000432862 727 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 USP9YP28-201ENST00000435142 589 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS4BO75351 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS4BO75351 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.16□□□□□ -1.58
VPS4BO75351 GYG1P1-201ENST00000460864 698 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 RN7SL222P-201ENST00000476452 299 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 RPL7P41-201ENST00000485823 957 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 RN7SL814P-201ENST00000487715 300 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 AC093267.1-201ENST00000489176 961 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS4BO75351 AC080014.1-201ENST00000496877 1201 ntBASIC5.16□□□□□ -1.58
VPS4BO75351 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS4BO75351 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS4BO75351 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS4BO75351 OR8A2P-201ENST00000528631 952 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms