Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AC073055.1-201ENST00000456901 1621 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 AL442639.1-201ENST00000625030 1899 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.81□□□□□ -1.64
PRPF39Q86UA1 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PRPF39Q86UA1 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC007529.1-201ENST00000418574 2178 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AL590240.1-201ENST00000334118 313 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 SNORA51.12-201ENST00000384448 134 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC246680.2-201ENST00000422106 389 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 RPL7P4-203ENST00000430239 730 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 MRPL50P1-201ENST00000431951 384 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 CEACAMP1-201ENST00000434624 1035 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC009263.1-201ENST00000441193 1239 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AL096829.2-201ENST00000446582 742 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC079168.2-201ENST00000453977 416 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 GTF2IP12-201ENST00000456547 356 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 HMGB1P19-201ENST00000517578 577 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC015912.2-201ENST00000571053 181 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 MIR4458-201ENST00000578872 75 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 MIR4284-201ENST00000578924 81 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 RN7SL690P-201ENST00000582087 240 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 RN7SL622P-201ENST00000585292 275 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC068790.7-201ENST00000602347 528 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC068790.4-201ENST00000602474 263 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 COX6CP4-201ENST00000605798 228 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC243756.2-201ENST00000618406 463 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC018926.3-201ENST00000618841 406 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC092608.3-201ENST00000625017 386 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
PRPF39Q86UA1 AC010928.1-201ENST00000592477 1447 ntBASIC4.8□□□□□ -1.64
PRPF39Q86UA1 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 RNA5SP391-201ENST00000363456 119 ntBASIC4.79□□□□□ -1.64
PRPF39Q86UA1 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 RNA5SP332-201ENST00000391063 115 ntBASIC4.79□□□□□ -1.64
PRPF39Q86UA1 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 AC069282.1-201ENST00000411911 526 ntBASIC4.79□□□□□ -1.64
PRPF39Q86UA1 PRELID3BP11-201ENST00000414230 479 ntBASIC4.79□□□□□ -1.64
PRPF39Q86UA1 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 CNOT7P1-201ENST00000429006 852 ntBASIC4.79□□□□□ -1.64
PRPF39Q86UA1 RPL37P1-201ENST00000432310 284 ntBASIC4.79□□□□□ -1.64
PRPF39Q86UA1 ARL4AP3-201ENST00000441452 574 ntBASIC4.79□□□□□ -1.64
PRPF39Q86UA1 MRPL35P4-201ENST00000453682 566 ntBASIC4.79□□□□□ -1.64
PRPF39Q86UA1 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.79□□□□□ -1.64
PRPF39Q86UA1 RPS17P11-201ENST00000474297 293 ntBASIC4.79□□□□□ -1.64
PRPF39Q86UA1 RPL12P20-201ENST00000475538 479 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms