Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 FAM106CP-201ENST00000582212 507 ntBASIC3.18□□□□□ -1.9
HIST1H1AQ02539 AC090948.1-201ENST00000607464 549 ntBASIC3.18□□□□□ -1.9
HIST1H1AQ02539 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC3.18□□□□□ -1.9
HIST1H1AQ02539 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.18□□□□□ -1.9
HIST1H1AQ02539 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HIST1H1AQ02539 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.18□□□□□ -1.9
HIST1H1AQ02539 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.18□□□□□ -1.9
HIST1H1AQ02539 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
HIST1H1AQ02539 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HIST1H1AQ02539 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
HIST1H1AQ02539 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.18□□□□□ -1.9
HIST1H1AQ02539 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HIST1H1AQ02539 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.18□□□□□ -1.9
HIST1H1AQ02539 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.18□□□□□ -1.9
HIST1H1AQ02539 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 NCAPGP1-201ENST00000505112 1814 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 SNORA58B-201ENST00000364259 136 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 RNA5SP505-201ENST00000364748 108 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AL583835.1-201ENST00000399570 407 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 SNORA11F-201ENST00000408237 128 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AL139095.3-201ENST00000419672 1203 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AC073464.3-201ENST00000422564 712 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AL732292.1-201ENST00000426692 226 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 RPL23AP46-201ENST00000438548 490 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AL512326.1-201ENST00000443050 721 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 RN7SL98P-201ENST00000462271 300 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 RPL9P32-201ENST00000464118 620 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 RN7SL810P-201ENST00000493031 276 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AC021146.1-201ENST00000511202 716 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AC010342.1-201ENST00000514047 877 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 IGKV2-23-201ENST00000518729 323 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 MIR5047-201ENST00000579212 100 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AC068790.7-201ENST00000602347 528 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 BMS1P7-201ENST00000602440 1052 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AC007423.1-201ENST00000605009 627 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AC116651.1-201ENST00000609724 556 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AP003497.2-201ENST00000624220 967 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AC244205.2-202ENST00000635781 342 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AL137100.1-201ENST00000556703 1620 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HIST1H1AQ02539 ASNSP1-204ENST00000641977 1664 ntBASIC3.17□□□□□ -1.9
HIST1H1AQ02539 PRO1804-201ENST00000623780 2050 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AC079741.1-201ENST00000321498 212 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 RNU6-304P-201ENST00000364855 107 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AP000357.1-201ENST00000409926 1165 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 RNA5SP36-201ENST00000410197 133 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 MFSD13B-201ENST00000420133 1290 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AC092832.1-201ENST00000422934 400 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 BRWD1P3-201ENST00000428816 390 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 RPL23AP1-201ENST00000428990 471 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AL513533.1-201ENST00000453728 415 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 RPL23AP81-201ENST00000455252 467 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AC096741.1-201ENST00000472250 846 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 RN7SL481P-201ENST00000477764 299 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 RNU6-1231P-201ENST00000517185 103 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HIST1H1AQ02539 AC109635.6-201ENST00000525487 1113 ntBASIC3.16□□□□□ -1.9
HIST1H1AQ02539 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms