Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.85□□□□□ -1.79
VCANP13611 Y_RNA.226-201ENST00000364337 114 ntBASIC3.85□□□□□ -1.79
VCANP13611 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.85□□□□□ -1.79
VCANP13611 NPM1P13-201ENST00000452663 865 ntBASIC3.85□□□□□ -1.79
VCANP13611 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.85□□□□□ -1.79
VCANP13611 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.85□□□□□ -1.79
VCANP13611 AC005344.1-201ENST00000613391 459 ntBASIC3.85□□□□□ -1.79
VCANP13611 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
VCANP13611 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC3.84□□□□□ -1.79
VCANP13611 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VCANP13611 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC3.84□□□□□ -1.79
VCANP13611 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VCANP13611 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VCANP13611 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
VCANP13611 EI24P3-201ENST00000399046 1062 ntBASIC3.84□□□□□ -1.79
VCANP13611 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC3.84□□□□□ -1.79
VCANP13611 AL162274.2-201ENST00000614406 332 ntBASIC3.84□□□□□ -1.79
VCANP13611 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.84□□□□□ -1.79
VCANP13611 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
VCANP13611 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VCANP13611 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VCANP13611 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
VCANP13611 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC3.84□□□□□ -1.79
VCANP13611 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VCANP13611 MR1-208ENST00000614012 7860 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
VCANP13611 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
VCANP13611 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VCANP13611 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VCANP13611 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC3.84□□□□□ -1.79
VCANP13611 DNAJA1P1-201ENST00000425106 1187 ntBASIC3.84□□□□□ -1.79
VCANP13611 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.84□□□□□ -1.79
VCANP13611 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.84□□□□□ -1.79
VCANP13611 AC006116.10-201ENST00000591836 581 ntBASIC3.84□□□□□ -1.79
VCANP13611 AC064801.1-201ENST00000612025 407 ntBASIC3.84□□□□□ -1.79
VCANP13611 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.84□□□□□ -1.79
VCANP13611 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
VCANP13611 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
VCANP13611 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.84□□□□□ -1.8
VCANP13611 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC3.84□□□□□ -1.8
VCANP13611 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
VCANP13611 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
VCANP13611 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.8
VCANP13611 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.83□□□□□ -1.8
VCANP13611 AL024507.1-201ENST00000412741 274 ntBASIC3.83□□□□□ -1.8
VCANP13611 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.83□□□□□ -1.8
VCANP13611 AC108734.1-201ENST00000439549 399 ntBASIC3.83□□□□□ -1.8
VCANP13611 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC3.83□□□□□ -1.8
VCANP13611 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC3.83□□□□□ -1.8
VCANP13611 LINC00561-201ENST00000565815 2738 ntBASIC3.83□□□□□ -1.8
VCANP13611 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VCANP13611 AC000374.1-201ENST00000434698 1745 ntBASIC3.83□□□□□ -1.8
VCANP13611 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VCANP13611 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC3.83□□□□□ -1.8
VCANP13611 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
VCANP13611 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.83□□□□□ -1.8
VCANP13611 SLC31A1P1-201ENST00000451221 567 ntBASIC3.83□□□□□ -1.8
VCANP13611 DDX39BP2-208ENST00000453923 258 ntBASIC3.83□□□□□ -1.8
VCANP13611 RPS4XP18-201ENST00000495480 763 ntBASIC3.83□□□□□ -1.8
VCANP13611 SNORA70.17-201ENST00000516449 133 ntBASIC3.83□□□□□ -1.8
VCANP13611 AL512310.1-201ENST00000548639 172 ntBASIC3.83□□□□□ -1.8
VCANP13611 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC3.83□□□□□ -1.8
VCANP13611 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VCANP13611 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VCANP13611 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC3.83□□□□□ -1.8
VCANP13611 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
VCANP13611 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
VCANP13611 SNORD9-201ENST00000362566 104 ntBASIC3.83□□□□□ -1.8
VCANP13611 AL513477.1-202ENST00000417061 214 ntBASIC3.83□□□□□ -1.8
VCANP13611 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC3.83□□□□□ -1.8
VCANP13611 RPL7P48-201ENST00000461513 746 ntBASIC3.83□□□□□ -1.8
VCANP13611 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC3.83□□□□□ -1.8
VCANP13611 AC084759.1-201ENST00000561168 290 ntBASIC3.83□□□□□ -1.8
VCANP13611 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.83□□□□□ -1.8
VCANP13611 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.83□□□□□ -1.8
VCANP13611 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.83□□□□□ -1.8
VCANP13611 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC3.83□□□□□ -1.8
VCANP13611 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VCANP13611 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.82□□□□□ -1.8
VCANP13611 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VCANP13611 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
VCANP13611 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.82□□□□□ -1.8
VCANP13611 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.82□□□□□ -1.8
VCANP13611 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC3.82□□□□□ -1.8
VCANP13611 AC138907.10-201ENST00000623708 983 ntBASIC3.82□□□□□ -1.8
VCANP13611 AP005264.7-201ENST00000625003 745 ntBASIC3.82□□□□□ -1.8
VCANP13611 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.82□□□□□ -1.8
VCANP13611 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.82□□□□□ -1.8
VCANP13611 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VCANP13611 NHLRC2-201ENST00000369301 11051 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
VCANP13611 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC3.82□□□□□ -1.8
VCANP13611 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
VCANP13611 RN7SKP186-201ENST00000365371 303 ntBASIC3.82□□□□□ -1.8
VCANP13611 ISCA1P6-201ENST00000427740 390 ntBASIC3.82□□□□□ -1.8
VCANP13611 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VCANP13611 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.82□□□□□ -1.8
VCANP13611 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.82□□□□□ -1.8
VCANP13611 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VCANP13611 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VCANP13611 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VCANP13611 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms