Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 EIF5A2P1-201ENST00000564027 460 ntBASIC3.69□□□□□ -1.82
VPS13AQ96RL7 RPL12P50-201ENST00000603116 116 ntBASIC3.69□□□□□ -1.82
VPS13AQ96RL7 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 AC000374.1-201ENST00000434698 1745 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 RPL7P60-201ENST00000397636 735 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 RPS4XP18-201ENST00000495480 763 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 AC019278.1-201ENST00000623516 479 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 MIR199A2-201ENST00000385289 110 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 COTL1P1-201ENST00000422309 375 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 RPS26P4-201ENST00000431743 355 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 RNU6-237P-201ENST00000515985 71 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 RNA5SP249-201ENST00000516127 99 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 COX6B1P6-201ENST00000522347 255 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 OR7E13P-201ENST00000526052 910 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 UBE2NP1-201ENST00000545592 458 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 RPL23AP87-202ENST00000573039 466 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 AC124312.6-202ENST00000623624 418 ntBASIC3.68□□□□□ -1.82
VPS13AQ96RL7 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS13AQ96RL7 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 HMGB3P9-201ENST00000441799 583 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AC005344.1-201ENST00000613391 459 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AL354976.1-201ENST00000613843 387 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AC007998.5-201ENST00000622938 237 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 SMG1P4-204ENST00000523028 4131 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 GNG5P1-201ENST00000255500 204 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AL158071.1-201ENST00000430315 461 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AC091862.1-201ENST00000438016 1100 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 HMGB1P21-201ENST00000502313 581 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AC012417.1-201ENST00000582307 1039 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AL390838.2-201ENST00000602394 274 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AL049844.2-201ENST00000604280 628 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 NOL8P1-201ENST00000508336 3529 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 RPL23AP69-201ENST00000431134 458 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AC006116.10-201ENST00000591836 581 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 AL137918.1-201ENST00000624542 1922 ntBASIC3.67□□□□□ -1.82
VPS13AQ96RL7 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS13AQ96RL7 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS13AQ96RL7 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms