Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 EXOSC3P1-201ENST00000448649 500 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AL354710.1-201ENST00000453641 246 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 RN7SL814P-201ENST00000487715 300 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AC008837.1-201ENST00000511513 412 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 SAP18P1-201ENST00000512058 390 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 NDUFB4P12-201ENST00000513465 390 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AC138938.1-201ENST00000515431 782 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 RNA5SP43-201ENST00000516559 110 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 OR4A2P-201ENST00000527276 913 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 NDUFS5P6-201ENST00000529136 295 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 BNIP3P11-201ENST00000603878 563 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AC005377.1-201ENST00000605126 456 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AL122125.1-201ENST00000616999 600 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AC015871.5-202ENST00000623252 701 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AL121594.5-201ENST00000631724 573 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 NEAT1-202ENST00000501122 22743 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AC010928.1-201ENST00000592477 1447 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AL034549.2-201ENST00000618285 3373 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 ANKRD36P1-201ENST00000344424 659 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 RNA5SP223-201ENST00000365174 120 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 RNU6-761P-201ENST00000384148 107 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 MIR670-201ENST00000390142 98 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 CEACAMP8-201ENST00000413902 580 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 RPS7P9-201ENST00000414704 586 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 GAPDHP49-201ENST00000421421 961 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 RPL12P34-201ENST00000424532 479 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 OSTCP5-201ENST00000425293 453 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 USP12PY-201ENST00000427677 1064 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 CYCSP24-201ENST00000445119 316 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AL035404.1-201ENST00000497982 568 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC023050.1-201ENST00000498198 304 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 HPRT1P2-201ENST00000505250 544 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 MRPS33P2-201ENST00000507850 322 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 HMGB1P19-201ENST00000517578 577 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC023824.3-201ENST00000569003 562 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 RN7SL690P-201ENST00000582087 240 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 VN1R88P-201ENST00000596787 292 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC105254.2-201ENST00000603636 436 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC112220.2-201ENST00000605513 533 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC243654.2-201ENST00000612843 443 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AL035461.2-201ENST00000619201 524 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AC004817.4-201ENST00000602396 3625 ntBASIC4.76□□□□□ -1.65
COL28A1Q2UY09 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.76□□□□□ -1.65
COL28A1Q2UY09 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AL450345.1-202ENST00000605741 3881 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms