Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 U3.4-201ENST00000363352 213 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 RNU6-253P-201ENST00000384730 105 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HOXD3P31249 AL121978.1-201ENST00000402778 359 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AL133264.1-201ENST00000407157 562 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 RPL23AP47-201ENST00000408017 460 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 Y_RNA.625-201ENST00000411256 107 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AL390774.1-201ENST00000411924 246 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD3P31249 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD3P31249 AL590762.4-201ENST00000425885 253 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 OR5BE1P-201ENST00000425977 939 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 SKP1P3-201ENST00000429280 487 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 RPL7P4-203ENST00000430239 730 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 AL590103.1-201ENST00000434488 307 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 RPS25P9-201ENST00000435591 252 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD3P31249 AL772161.1-201ENST00000439130 476 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD3P31249 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 AC023271.1-201ENST00000445936 1090 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AL589765.3-201ENST00000446084 462 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD3P31249 TPMTP4-201ENST00000450749 678 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 KATNBL1P6-201ENST00000453433 915 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AC091685.2-201ENST00000454924 864 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 HMGB1P4-201ENST00000455362 567 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 RPL35AP28-201ENST00000459730 331 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 RPS4XP12-201ENST00000461747 709 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 RPL23AP71-201ENST00000470966 469 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AL161747.1-201ENST00000480068 358 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 GLUD1P3-202ENST00000508551 200 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD3P31249 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD3P31249 AC008885.2-201ENST00000509506 930 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD3P31249 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD3P31249 MTCO2P32-201ENST00000514865 403 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 RNU6-678P-201ENST00000516832 109 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 SCARNA16.4-201ENST00000516956 187 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 RN7SKP283-201ENST00000517197 270 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 TBCA-206ENST00000518338 551 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 IGKV2-36-201ENST00000519999 223 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXD3P31249 IGHVIII-76-1-201ENST00000523776 286 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 ZDHHC20P3-201ENST00000531576 336 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 AL390726.5-202ENST00000564800 256 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD3P31249 AP005262.1-201ENST00000582646 997 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AC080078.2-201ENST00000603766 501 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AL139286.2-201ENST00000606838 396 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 AC104073.3-201ENST00000610942 955 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 AC099842.1-201ENST00000619919 596 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 AC008443.7-201ENST00000622195 246 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXD3P31249 AC092656.1-203ENST00000624134 423 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 PCMTD1P7-201ENST00000634506 357 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 OR5BE1P-202ENST00000641168 1176 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HOXD3P31249 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXD3P31249 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 DDX18P4-201ENST00000511690 1966 ntBASIC4.22□□□□□ -1.73
HOXD3P31249 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXD3P31249 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXD3P31249 AL355834.1-201ENST00000556602 3965 ntBASIC4.21□□□□□ -1.73
HOXD3P31249 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms