Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AP005264.7-201ENST00000625003 745 ntBASIC4.1□□□□□ -1.75
HOXC4P09017 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXC4P09017 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HOXC4P09017 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXC4P09017 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXC4P09017 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXC4P09017 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXC4P09017 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
HOXC4P09017 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXC4P09017 AC116667.1-201ENST00000604855 2072 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AC092435.4-201ENST00000623012 4159 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXC4P09017 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXC4P09017 SNORA60-201ENST00000362396 134 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC4P09017 AL607077.1-201ENST00000401718 499 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 TPT1P2-201ENST00000413105 503 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AC115285.1-201ENST00000424879 736 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AC022022.1-201ENST00000430304 178 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AL117339.2-201ENST00000430475 180 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC4P09017 RPL21P89-201ENST00000444021 467 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC4P09017 RSL24D1P2-201ENST00000445584 366 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 RAD23BP3-201ENST00000454157 1152 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 RPL36AP13-201ENST00000457490 317 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AF213884.1-201ENST00000488102 463 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 HAUS1P1-201ENST00000505275 832 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 MTND2P31-201ENST00000512602 616 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AC087272.1-201ENST00000523624 533 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXC4P09017 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXC4P09017 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC4P09017 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXC4P09017 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC4P09017 SNX6P1-201ENST00000601728 1224 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AC012213.4-201ENST00000606457 354 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AC026979.4-201ENST00000606555 645 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC4P09017 AC090948.2-201ENST00000607363 564 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AC007620.3-201ENST00000608131 497 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 AC078899.5-201ENST00000612475 178 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.09□□□□□ -1.75
HOXC4P09017 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.75
HOXC4P09017 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXC4P09017 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXC4P09017 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXC4P09017 IQCB2P-201ENST00000401788 1633 ntBASIC4.09□□□□□ -1.76
HOXC4P09017 ERCC6-202ENST00000374127 1782 ntBASIC4.09□□□□□ -1.76
HOXC4P09017 AC074029.4-201ENST00000624796 1859 ntBASIC4.09□□□□□ -1.76
HOXC4P09017 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC4P09017 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
HOXC4P09017 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC4P09017 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
HOXC4P09017 RNU1-108P-201ENST00000362556 161 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HOXC4P09017 RNU11-4P-201ENST00000391149 133 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 ZNF736P10Y-201ENST00000403990 1110 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC4P09017 VN1R8P-201ENST00000407739 893 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC4P09017 TRIM60P17-201ENST00000415181 719 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 MTCO1P8-201ENST00000416914 1523 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC4P09017 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXC4P09017 RPL23AP4-201ENST00000427757 463 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 AL392003.1-201ENST00000434394 243 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC4P09017 RPL23AP89-201ENST00000439324 255 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 AC006011.1-201ENST00000442758 349 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC4P09017 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC4P09017 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC4P09017 AC069277.2-201ENST00000454211 432 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXC4P09017 TPT1P3-201ENST00000492841 512 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC4P09017 HPRT1P2-201ENST00000505250 544 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC4P09017 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC4P09017 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC4P09017 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC4P09017 AC027176.2-201ENST00000559166 746 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXC4P09017 AC090312.1-201ENST00000580637 348 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXC4P09017 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXC4P09017 AC068790.5-201ENST00000602741 355 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 AC019131.2-201ENST00000609071 870 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 CASC19-261ENST00000641853 1638 ntBASIC4.08□□□□□ -1.76
HOXC4P09017 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC4P09017 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXC4P09017 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
HOXC4P09017 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.07□□□□□ -1.76
HOXC4P09017 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
HOXC4P09017 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXC4P09017 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXC4P09017 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC4P09017 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms