Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 RCC2P6-201ENST00000526625 1557 ntBASIC20.3■□□□□ 0.84
USP3Q9Y6I4 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 BX088651.1-201ENST00000540551 451 ntBASIC20.3■□□□□ 0.84
USP3Q9Y6I4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 ZNF815P-204ENST00000434898 1737 ntBASIC20.3■□□□□ 0.84
USP3Q9Y6I4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP3Q9Y6I4 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.29■□□□□ 0.84
USP3Q9Y6I4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.29■□□□□ 0.84
USP3Q9Y6I4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP3Q9Y6I4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP3Q9Y6I4 AC008040.2-201ENST00000461049 708 ntBASIC20.29■□□□□ 0.84
USP3Q9Y6I4 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.29■□□□□ 0.84
USP3Q9Y6I4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.29■□□□□ 0.84
USP3Q9Y6I4 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.29■□□□□ 0.84
USP3Q9Y6I4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP3Q9Y6I4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
USP3Q9Y6I4 AC079598.2-202ENST00000546624 1451 ntBASIC20.29■□□□□ 0.84
USP3Q9Y6I4 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
USP3Q9Y6I4 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
USP3Q9Y6I4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.28■□□□□ 0.84
USP3Q9Y6I4 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP3Q9Y6I4 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 KRT8P41-201ENST00000533985 1514 ntBASIC20.27■□□□□ 0.84
USP3Q9Y6I4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 UNC93B2-201ENST00000285383 730 ntBASIC20.27■□□□□ 0.84
USP3Q9Y6I4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 AC004951.3-201ENST00000418645 1148 ntBASIC20.27■□□□□ 0.84
USP3Q9Y6I4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 DGCR10-201ENST00000609839 495 ntBASIC20.27■□□□□ 0.84
USP3Q9Y6I4 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
USP3Q9Y6I4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP3Q9Y6I4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.27■□□□□ 0.83
USP3Q9Y6I4 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP3Q9Y6I4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
USP3Q9Y6I4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
USP3Q9Y6I4 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP3Q9Y6I4 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms