Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 MIR6786-201ENST00000616843 113 ntBASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 AC093484.2-201ENST00000580996 2166 ntBASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 AL355355.2-201ENST00000442321 338 ntBASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CLDN16Q9Y5I7 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 KRT17P2-201ENST00000300992 1314 ntBASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 RBM17P1-201ENST00000453646 1190 ntBASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 AC091390.4-202ENST00000476426 537 ntBASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.05■□□□□ 0.48
CLDN16Q9Y5I7 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 AC079598.2-202ENST00000546624 1451 ntBASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 FSCN1P1-201ENST00000568912 1481 ntBASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN16Q9Y5I7 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLDN16Q9Y5I7 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.03■□□□□ 0.48
CLDN16Q9Y5I7 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLDN16Q9Y5I7 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLDN16Q9Y5I7 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLDN16Q9Y5I7 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLDN16Q9Y5I7 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.03■□□□□ 0.48
CLDN16Q9Y5I7 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms