Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 AC093503.3-201ENST00000624917 2352 ntBASIC15.67■□□□□ 0.1
FOXA2Q9Y261 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 SLC29A4P2-201ENST00000504749 1089 ntBASIC15.66■□□□□ 0.1
FOXA2Q9Y261 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 AC006557.6-201ENST00000623071 864 ntBASIC15.66■□□□□ 0.1
FOXA2Q9Y261 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
FOXA2Q9Y261 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 TFP1-202ENST00000475455 1573 ntBASIC15.65■□□□□ 0.1
FOXA2Q9Y261 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA2Q9Y261 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC15.64■□□□□ 0.1
FOXA2Q9Y261 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms