Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 KRT16P5-201ENST00000455284 522 ntBASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 AC104417.2-201ENST00000562989 1793 ntBASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
AP4E1Q9UPM8 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
AP4E1Q9UPM8 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 RPPH1-201ENST00000516869 333 ntBASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
AP4E1Q9UPM8 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 SDHAP1-207ENST00000440850 2000 ntBASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
AP4E1Q9UPM8 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
AP4E1Q9UPM8 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
AP4E1Q9UPM8 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms