Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 AC091390.4-202ENST00000476426 537 ntBASIC20.53■□□□□ 0.88
CDH9Q9ULB4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.53■□□□□ 0.88
CDH9Q9ULB4 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 AC211429.1-201ENST00000415277 523 ntBASIC20.52■□□□□ 0.88
CDH9Q9ULB4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 ZNF815P-204ENST00000434898 1737 ntBASIC20.52■□□□□ 0.88
CDH9Q9ULB4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH9Q9ULB4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDH9Q9ULB4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.52■□□□□ 0.87
CDH9Q9ULB4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 FAM207BP-201ENST00000447172 505 ntBASIC20.51■□□□□ 0.87
CDH9Q9ULB4 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 AC097488.1-201ENST00000507834 756 ntBASIC20.51■□□□□ 0.87
CDH9Q9ULB4 AP005242.2-201ENST00000580065 1175 ntBASIC20.51■□□□□ 0.87
CDH9Q9ULB4 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 AC104417.2-201ENST00000562989 1793 ntBASIC20.51■□□□□ 0.87
CDH9Q9ULB4 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH9Q9ULB4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 KRT8P41-201ENST00000533985 1514 ntBASIC20.5■□□□□ 0.87
CDH9Q9ULB4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 AL390955.1-201ENST00000428694 934 ntBASIC20.5■□□□□ 0.87
CDH9Q9ULB4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.5■□□□□ 0.87
CDH9Q9ULB4 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
CDH9Q9ULB4 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.49■□□□□ 0.87
CDH9Q9ULB4 TREX1-205ENST00000625293 1783 ntBASIC20.49■□□□□ 0.87
CDH9Q9ULB4 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.49■□□□□ 0.87
CDH9Q9ULB4 PCDHAC2-203ENST00000615316 3011 ntBASIC20.49■□□□□ 0.87
CDH9Q9ULB4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH9Q9ULB4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH9Q9ULB4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.49■□□□□ 0.87
CDH9Q9ULB4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.49■□□□□ 0.87
CDH9Q9ULB4 LINC01023-201ENST00000606054 436 ntBASIC20.49■□□□□ 0.87
CDH9Q9ULB4 AC133561.5-201ENST00000635547 218 ntBASIC20.49■□□□□ 0.87
CDH9Q9ULB4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CDH9Q9ULB4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
CDH9Q9ULB4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.49■□□□□ 0.87
CDH9Q9ULB4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.49■□□□□ 0.87
CDH9Q9ULB4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CDH9Q9ULB4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDH9Q9ULB4 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.48■□□□□ 0.87
CDH9Q9ULB4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH9Q9ULB4 AC125437.2-201ENST00000625180 2167 ntBASIC20.48■□□□□ 0.87
CDH9Q9ULB4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.48■□□□□ 0.87
CDH9Q9ULB4 KRT8P9-201ENST00000558927 1449 ntBASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms