Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CNTN3Q9P232 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.89■□□□□ 0.94
CNTN3Q9P232 AC096733.2-201ENST00000609937 1394 ntBASIC20.89■□□□□ 0.93
CNTN3Q9P232 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CNTN3Q9P232 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CNTN3Q9P232 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CNTN3Q9P232 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.89■□□□□ 0.93
CNTN3Q9P232 FAM207BP-201ENST00000447172 505 ntBASIC20.89■□□□□ 0.93
CNTN3Q9P232 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.89■□□□□ 0.93
CNTN3Q9P232 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.89■□□□□ 0.93
CNTN3Q9P232 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CNTN3Q9P232 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
CNTN3Q9P232 AC145285.6-201ENST00000604632 637 ntBASIC20.89■□□□□ 0.93
CNTN3Q9P232 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.89■□□□□ 0.93
CNTN3Q9P232 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.89■□□□□ 0.93
CNTN3Q9P232 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CNTN3Q9P232 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CNTN3Q9P232 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
CNTN3Q9P232 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CNTN3Q9P232 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.88■□□□□ 0.93
CNTN3Q9P232 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CNTN3Q9P232 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.88■□□□□ 0.93
CNTN3Q9P232 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.88■□□□□ 0.93
CNTN3Q9P232 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.88■□□□□ 0.93
CNTN3Q9P232 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CNTN3Q9P232 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.88■□□□□ 0.93
CNTN3Q9P232 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CNTN3Q9P232 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.88■□□□□ 0.93
CNTN3Q9P232 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.88■□□□□ 0.93
CNTN3Q9P232 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CNTN3Q9P232 AC010947.1-201ENST00000623454 693 ntBASIC20.88■□□□□ 0.93
CNTN3Q9P232 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CNTN3Q9P232 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.88■□□□□ 0.93
CNTN3Q9P232 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CNTN3Q9P232 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CNTN3Q9P232 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CNTN3Q9P232 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.88■□□□□ 0.93
CNTN3Q9P232 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.88■□□□□ 0.93
CNTN3Q9P232 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CNTN3Q9P232 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.88■□□□□ 0.93
CNTN3Q9P232 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CNTN3Q9P232 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CNTN3Q9P232 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CNTN3Q9P232 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CNTN3Q9P232 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CNTN3Q9P232 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.87■□□□□ 0.93
CNTN3Q9P232 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.87■□□□□ 0.93
CNTN3Q9P232 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CNTN3Q9P232 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CNTN3Q9P232 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.87■□□□□ 0.93
CNTN3Q9P232 NAPSB-206ENST00000562112 1266 ntBASIC20.87■□□□□ 0.93
CNTN3Q9P232 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.87■□□□□ 0.93
CNTN3Q9P232 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CNTN3Q9P232 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CNTN3Q9P232 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CNTN3Q9P232 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.87■□□□□ 0.93
CNTN3Q9P232 AC104417.2-201ENST00000562989 1793 ntBASIC20.87■□□□□ 0.93
CNTN3Q9P232 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CNTN3Q9P232 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CNTN3Q9P232 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CNTN3Q9P232 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CNTN3Q9P232 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CNTN3Q9P232 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CNTN3Q9P232 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CNTN3Q9P232 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CNTN3Q9P232 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CNTN3Q9P232 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 CRYGFP-201ENST00000418459 633 ntBASIC20.86■□□□□ 0.93
CNTN3Q9P232 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 ZNF815P-204ENST00000434898 1737 ntBASIC20.86■□□□□ 0.93
CNTN3Q9P232 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CNTN3Q9P232 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CNTN3Q9P232 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CNTN3Q9P232 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CNTN3Q9P232 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CNTN3Q9P232 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CNTN3Q9P232 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CNTN3Q9P232 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CNTN3Q9P232 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CNTN3Q9P232 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.85■□□□□ 0.93
CNTN3Q9P232 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.85■□□□□ 0.93
CNTN3Q9P232 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CNTN3Q9P232 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CNTN3Q9P232 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CNTN3Q9P232 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CNTN3Q9P232 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CNTN3Q9P232 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CNTN3Q9P232 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CNTN3Q9P232 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms