Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
IFT140Q96RY7 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
IFT140Q96RY7 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC32.26■■■□□ 2.75
IFT140Q96RY7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
IFT140Q96RY7 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
IFT140Q96RY7 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
IFT140Q96RY7 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
IFT140Q96RY7 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC32.25■■■□□ 2.75
IFT140Q96RY7 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC32.25■■■□□ 2.75
IFT140Q96RY7 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
IFT140Q96RY7 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC32.25■■■□□ 2.75
IFT140Q96RY7 RPP21-221ENST00000428040 594 ntTSL 2 BASIC32.25■■■□□ 2.75
IFT140Q96RY7 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
IFT140Q96RY7 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC32.25■■■□□ 2.75
IFT140Q96RY7 FOSL1P1-201ENST00000511041 816 ntBASIC32.25■■■□□ 2.75
IFT140Q96RY7 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC32.25■■■□□ 2.75
IFT140Q96RY7 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
IFT140Q96RY7 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
IFT140Q96RY7 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
IFT140Q96RY7 PLK5-205ENST00000642079 1969 ntBASIC32.25■■■□□ 2.75
IFT140Q96RY7 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC32.25■■■□□ 2.75
IFT140Q96RY7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC32.24■■■□□ 2.75
IFT140Q96RY7 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
IFT140Q96RY7 LINC00265-3P-201ENST00000447588 903 ntBASIC32.24■■■□□ 2.75
IFT140Q96RY7 AC079776.4-201ENST00000511039 504 ntBASIC32.24■■■□□ 2.75
IFT140Q96RY7 SPEG-225ENST00000617028 815 ntTSL 5 BASIC32.24■■■□□ 2.75
IFT140Q96RY7 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
IFT140Q96RY7 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
IFT140Q96RY7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC32.23■■■□□ 2.75
IFT140Q96RY7 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
IFT140Q96RY7 KRT16P4-201ENST00000453883 522 ntBASIC32.23■■■□□ 2.75
IFT140Q96RY7 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC32.23■■■□□ 2.75
IFT140Q96RY7 AC079602.3-201ENST00000623931 403 ntBASIC32.23■■■□□ 2.75
IFT140Q96RY7 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
IFT140Q96RY7 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC32.23■■■□□ 2.75
IFT140Q96RY7 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC32.23■■■□□ 2.75
IFT140Q96RY7 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
IFT140Q96RY7 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
IFT140Q96RY7 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
IFT140Q96RY7 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC32.23■■■□□ 2.75
IFT140Q96RY7 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC32.23■■■□□ 2.75
IFT140Q96RY7 AP000867.3-201ENST00000524675 377 ntBASIC32.23■■■□□ 2.75
IFT140Q96RY7 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC32.23■■■□□ 2.75
IFT140Q96RY7 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC32.23■■■□□ 2.75
IFT140Q96RY7 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC32.23■■■□□ 2.75
IFT140Q96RY7 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC32.23■■■□□ 2.75
IFT140Q96RY7 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC32.23■■■□□ 2.75
IFT140Q96RY7 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC32.22■■■□□ 2.75
IFT140Q96RY7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
IFT140Q96RY7 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
IFT140Q96RY7 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
IFT140Q96RY7 TOB2P1-201ENST00000469761 992 ntBASIC32.22■■■□□ 2.75
IFT140Q96RY7 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
IFT140Q96RY7 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC32.22■■■□□ 2.75
IFT140Q96RY7 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC32.22■■■□□ 2.75
IFT140Q96RY7 NME4-212ENST00000621774 904 ntTSL 3 BASIC32.22■■■□□ 2.75
IFT140Q96RY7 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
IFT140Q96RY7 AKR1C7P-201ENST00000305623 895 ntBASIC32.21■■■□□ 2.75
IFT140Q96RY7 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC32.21■■■□□ 2.75
IFT140Q96RY7 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
IFT140Q96RY7 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC32.21■■■□□ 2.75
IFT140Q96RY7 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC32.21■■■□□ 2.75
IFT140Q96RY7 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
IFT140Q96RY7 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
IFT140Q96RY7 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC32.2■■■□□ 2.75
IFT140Q96RY7 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
IFT140Q96RY7 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC32.2■■■□□ 2.75
IFT140Q96RY7 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC32.2■■■□□ 2.75
IFT140Q96RY7 RNA5SP419-201ENST00000515908 135 ntBASIC32.2■■■□□ 2.75
IFT140Q96RY7 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC32.2■■■□□ 2.75
IFT140Q96RY7 GALC-202ENST00000393568 2054 ntTSL 2 BASIC32.2■■■□□ 2.74
IFT140Q96RY7 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC32.2■■■□□ 2.74
IFT140Q96RY7 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC32.2■■■□□ 2.74
IFT140Q96RY7 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
IFT140Q96RY7 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC32.19■■■□□ 2.74
IFT140Q96RY7 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
IFT140Q96RY7 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC32.19■■■□□ 2.74
IFT140Q96RY7 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC32.19■■■□□ 2.74
IFT140Q96RY7 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
IFT140Q96RY7 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
IFT140Q96RY7 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC32.19■■■□□ 2.74
IFT140Q96RY7 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC32.19■■■□□ 2.74
IFT140Q96RY7 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC32.19■■■□□ 2.74
IFT140Q96RY7 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC32.19■■■□□ 2.74
IFT140Q96RY7 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC32.19■■■□□ 2.74
IFT140Q96RY7 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC32.19■■■□□ 2.74
IFT140Q96RY7 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC32.19■■■□□ 2.74
IFT140Q96RY7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC32.19■■■□□ 2.74
IFT140Q96RY7 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC32.19■■■□□ 2.74
IFT140Q96RY7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
IFT140Q96RY7 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
IFT140Q96RY7 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC32.18■■■□□ 2.74
IFT140Q96RY7 TSPY22P-201ENST00000427496 604 ntBASIC32.18■■■□□ 2.74
IFT140Q96RY7 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC32.18■■■□□ 2.74
IFT140Q96RY7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
IFT140Q96RY7 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
IFT140Q96RY7 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC32.18■■■□□ 2.74
IFT140Q96RY7 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC32.17■■■□□ 2.74
IFT140Q96RY7 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
IFT140Q96RY7 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC32.17■■■□□ 2.74
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms