Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
LRCH3Q96II8 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
LRCH3Q96II8 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRCH3Q96II8 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LRCH3Q96II8 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LRCH3Q96II8 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.01■□□□□ 0.95
LRCH3Q96II8 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
LRCH3Q96II8 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
LRCH3Q96II8 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
LRCH3Q96II8 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
LRCH3Q96II8 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC21.01■□□□□ 0.95
LRCH3Q96II8 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LRCH3Q96II8 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21.01■□□□□ 0.95
LRCH3Q96II8 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRCH3Q96II8 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21■□□□□ 0.95
LRCH3Q96II8 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21■□□□□ 0.95
LRCH3Q96II8 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21■□□□□ 0.95
LRCH3Q96II8 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 TUBB8P6-201ENST00000436895 1288 ntBASIC21■□□□□ 0.95
LRCH3Q96II8 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC21■□□□□ 0.95
LRCH3Q96II8 CFL1-212ENST00000531413 636 ntTSL 3 BASIC21■□□□□ 0.95
LRCH3Q96II8 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC21■□□□□ 0.95
LRCH3Q96II8 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
LRCH3Q96II8 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21■□□□□ 0.95
LRCH3Q96II8 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC21■□□□□ 0.95
LRCH3Q96II8 AL121772.3-201ENST00000610840 674 ntBASIC21■□□□□ 0.95
LRCH3Q96II8 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 HLA-A-209ENST00000638375 975 ntBASIC21■□□□□ 0.95
LRCH3Q96II8 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21■□□□□ 0.95
LRCH3Q96II8 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21■□□□□ 0.95
LRCH3Q96II8 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21■□□□□ 0.95
LRCH3Q96II8 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
LRCH3Q96II8 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21■□□□□ 0.95
LRCH3Q96II8 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LRCH3Q96II8 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRCH3Q96II8 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LRCH3Q96II8 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LRCH3Q96II8 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LRCH3Q96II8 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LRCH3Q96II8 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 LINC01711-201ENST00000598340 967 ntBASIC20.99■□□□□ 0.95
LRCH3Q96II8 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LRCH3Q96II8 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRCH3Q96II8 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.99■□□□□ 0.95
LRCH3Q96II8 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
LRCH3Q96II8 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRCH3Q96II8 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
LRCH3Q96II8 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LRCH3Q96II8 PTBP1P-201ENST00000554374 1601 ntBASIC20.98■□□□□ 0.95
LRCH3Q96II8 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.98■□□□□ 0.95
LRCH3Q96II8 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
LRCH3Q96II8 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.98■□□□□ 0.95
LRCH3Q96II8 FOSL1P1-201ENST00000511041 816 ntBASIC20.98■□□□□ 0.95
LRCH3Q96II8 SLC25A1P1-201ENST00000528351 927 ntBASIC20.98■□□□□ 0.95
LRCH3Q96II8 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.98■□□□□ 0.95
LRCH3Q96II8 AL121912.1-201ENST00000603683 238 ntBASIC20.98■□□□□ 0.95
LRCH3Q96II8 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.98■□□□□ 0.95
LRCH3Q96II8 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.98■□□□□ 0.95
LRCH3Q96II8 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRCH3Q96II8 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRCH3Q96II8 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LRCH3Q96II8 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRCH3Q96II8 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRCH3Q96II8 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRCH3Q96II8 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRCH3Q96II8 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRCH3Q96II8 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.97■□□□□ 0.95
LRCH3Q96II8 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.97■□□□□ 0.95
LRCH3Q96II8 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.97■□□□□ 0.95
LRCH3Q96II8 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRCH3Q96II8 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
LRCH3Q96II8 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRCH3Q96II8 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms