Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHFRQ96EP1 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHFRQ96EP1 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.74■□□□□ 0.75
CHFRQ96EP1 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHFRQ96EP1 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.74■□□□□ 0.75
CHFRQ96EP1 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.74■□□□□ 0.75
CHFRQ96EP1 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.74■□□□□ 0.75
CHFRQ96EP1 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.74■□□□□ 0.75
CHFRQ96EP1 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.74■□□□□ 0.75
CHFRQ96EP1 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHFRQ96EP1 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHFRQ96EP1 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHFRQ96EP1 AP003041.3-201ENST00000527151 707 ntBASIC19.74■□□□□ 0.75
CHFRQ96EP1 AL441883.1-201ENST00000566170 1045 ntBASIC19.74■□□□□ 0.75
CHFRQ96EP1 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHFRQ96EP1 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.74■□□□□ 0.75
CHFRQ96EP1 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.74■□□□□ 0.75
CHFRQ96EP1 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
CHFRQ96EP1 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CHFRQ96EP1 AL162377.1-201ENST00000618844 1793 ntBASIC19.74■□□□□ 0.75
CHFRQ96EP1 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHFRQ96EP1 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHFRQ96EP1 AP005212.1-201ENST00000581547 1997 ntBASIC19.74■□□□□ 0.75
CHFRQ96EP1 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHFRQ96EP1 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHFRQ96EP1 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHFRQ96EP1 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHFRQ96EP1 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHFRQ96EP1 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 FAM86EP-206ENST00000510506 987 ntBASIC19.73■□□□□ 0.75
CHFRQ96EP1 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHFRQ96EP1 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHFRQ96EP1 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHFRQ96EP1 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.73■□□□□ 0.75
CHFRQ96EP1 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CHFRQ96EP1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHFRQ96EP1 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHFRQ96EP1 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CHFRQ96EP1 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHFRQ96EP1 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHFRQ96EP1 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHFRQ96EP1 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.72■□□□□ 0.75
CHFRQ96EP1 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.72■□□□□ 0.75
CHFRQ96EP1 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHFRQ96EP1 AC092647.4-201ENST00000457211 535 ntBASIC19.72■□□□□ 0.75
CHFRQ96EP1 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.72■□□□□ 0.75
CHFRQ96EP1 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHFRQ96EP1 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHFRQ96EP1 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.72■□□□□ 0.75
CHFRQ96EP1 AL023973.1-201ENST00000624619 620 ntBASIC19.72■□□□□ 0.75
CHFRQ96EP1 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.72■□□□□ 0.75
CHFRQ96EP1 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.72■□□□□ 0.75
CHFRQ96EP1 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHFRQ96EP1 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHFRQ96EP1 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHFRQ96EP1 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.72■□□□□ 0.75
CHFRQ96EP1 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.72■□□□□ 0.75
CHFRQ96EP1 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHFRQ96EP1 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.72■□□□□ 0.75
CHFRQ96EP1 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.71■□□□□ 0.75
CHFRQ96EP1 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHFRQ96EP1 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHFRQ96EP1 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHFRQ96EP1 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHFRQ96EP1 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHFRQ96EP1 KRT8P45-201ENST00000414328 1447 ntBASIC19.71■□□□□ 0.75
CHFRQ96EP1 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHFRQ96EP1 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHFRQ96EP1 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
CHFRQ96EP1 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHFRQ96EP1 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.71■□□□□ 0.75
CHFRQ96EP1 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.71■□□□□ 0.75
CHFRQ96EP1 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.71■□□□□ 0.75
CHFRQ96EP1 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.71■□□□□ 0.75
CHFRQ96EP1 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CHFRQ96EP1 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.71■□□□□ 0.75
CHFRQ96EP1 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CHFRQ96EP1 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHFRQ96EP1 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHFRQ96EP1 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHFRQ96EP1 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CHFRQ96EP1 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CHFRQ96EP1 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHFRQ96EP1 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
CHFRQ96EP1 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHFRQ96EP1 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.7■□□□□ 0.74
CHFRQ96EP1 KRT8P11-201ENST00000409686 1436 ntBASIC19.7■□□□□ 0.74
CHFRQ96EP1 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHFRQ96EP1 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms